Alkalicoccus chagannorensis (DSM 18086, CCM 7371, CECT 7153)

Name: Alkalicoccus chagannorensis (DSM 18086, CCM 7371, CECT 7153)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1277

Type strain

Strain Designation CG-15

Culture col. no. DSM 18086 CCM 7371 CECT 7153 CGMCC 1.6292 CG-15 1 more

NCBI tax ID(s) 1121087 427072

Special Collections DSMZ Literature strains CIP

Links

Alkalicoccus chagannorensis CG-15 is a facultative anaerobe, spore-forming, mesophilic prokaryote that was isolated from lake Chagannor.

spore-forming Gram-positive motile rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 309527

CCM 7371,CECT 7153,CGMCC 1.6292,DSM 18086,CIP 109712,LMG 24740

@ref 20215

Last LPSN update 2025-12-16 09:47:04

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Alkalicoccus

Species Alkalicoccus chagannorensis

Full scientific name Alkalicoccus chagannorensis (Carrasco et al. 2007) Gupta et al. 2020

Synonyms (1)

Bacillus chagannorensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32227	positive	2.0-3.0 µm	0.6-0.7 µm	rod-shaped
118222	positive			rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7387	HORIKOSHI-1 MEDIUM WITH 10% NaCl (DSMZ Medium 1081a)	Medium recipe at MediaDive	Name: HORIKOSHI-1 MEDIUM WITH 10% NaCl (DSMZ Medium 1081a) Composition: NaCl 100.0 g/l Agar 15.0 g/l Glucose 10.0 g/l Na2CO3 10.0 g/l Polypeptone 5.0 g/l Yeast extract 5.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.2 g/l Distilled water
37820	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
118222	CIP Medium 72	Medium recipe at CIP
118222	CIP Medium 700	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7387	positive	growth	30	mesophilic
32227	positive	growth	6-40
32227	positive	optimum	37	mesophilic
37820	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
32227	positive	optimum	8.5
32227	positive	growth	5.8-11.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

32227

Oxygen tolerancefacultative anaerobe

Spore formation

32227

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32227	NaCl	positive	growth	3-20 %
32227	NaCl	positive	optimum	7 %

Murein

@ref	Murein short key	Type
7387	A31	A1gamma m-Dpm-direct

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32227	22599 ChEBI	arabinose	+	carbon source
32227	28885 ChEBI	butanol	+	carbon source
32227	4853 ChEBI	esculin	+	hydrolysis
32227	16236 ChEBI	ethanol	+	carbon source
32227	28757 ChEBI	fructose	+	carbon source
32227	33984 ChEBI	fucose	+	carbon source
32227	28260 ChEBI	galactose	+	carbon source
32227	17234 ChEBI	glucose	+	carbon source
32227	17716 ChEBI	lactose	+	carbon source
32227	17306 ChEBI	maltose	+	carbon source
32227	29864 ChEBI	mannitol	+	carbon source
32227	37684 ChEBI	mannose	+	carbon source
32227	28053 ChEBI	melibiose	+	carbon source
32227	17268 ChEBI	myo-inositol	+	carbon source
32227	17632 ChEBI	nitrate	+	reduction
118222	17632 ChEBI	nitrate	-	reduction
118222	16301 ChEBI	nitrite	-	reduction
32227	17272 ChEBI	propionate	+	carbon source
32227	16634 ChEBI	raffinose	+	carbon source
32227	33942 ChEBI	ribose	+	carbon source
32227	17814 ChEBI	salicin	+	carbon source
32227	30911 ChEBI	sorbitol	+	carbon source
32227	27082 ChEBI	trehalose	+	carbon source
32227	17151 ChEBI	xylitol	+	carbon source
32227	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118222	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32227	catalase	+	1.11.1.6
118222	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118222	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
118222	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118222	-	-	+	-	-	+	+	-	-	+	-	+	+	+	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7387	lake Chagannor	Inner Mongolia	China	CHN	Asia
118222	Environment, Soda lake	Chagannor lake, inner Mongolia	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AM492159 (>99% sequence identity) for Alkalicoccus chagannorensis subclade from Microbeatlas

Aquatic Samples	44
Soil Samples	12
Animal Samples	7
Plant Samples
Total Samples	63

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7387	1	Risk group (German classification) According to TRBA 466
118222	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM42972v1 assembly for Alkalicoccus chagannorensis DSM 18086	scaffold	GCA_000429725	1121087.3	2524614595	1121087	67.21

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7387	Bacillus chagannorensis 16S rRNA gene, type strain CG-15T	AM492159	1467		427072

GC content

7387

GC-content (mol%)53.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alkalicoccus chagannorensis DSM 18086
NCBI: GCA_000429725

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	68.60	no
125439	gram_stain	BacteriaNetⓘ	variable	86.50	no
125439	motility	BacteriaNetⓘ	yes	73.90	no
125439	spore_formation	BacteriaNetⓘ	yes	84.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alkalicoccus chagannorensis DSM 18086 DSM 18086
NCBI: GCA_000429725.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	81.26	yes
125438	anaerobic	anaerobicⓘ	no	96.15	yes
125438	aerobic	aerobicⓘ	yes	78.44	no
125438	spore-forming	spore-formingⓘ	yes	59.91	no
125438	thermophilic	thermophileⓘ	no	92.21	yes
125438	flagellated	motile2+ⓘ	yes	80.68	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillusurumqiensis sp. nov., a moderately haloalkaliphilic bacterium isolated from a salt lake.	Zhang S, Li Z, Yan Y, Zhang C, Li J, Zhao B	Int J Syst Evol Microbiol	10.1099/ijsem.0.001028	2016
Phylogeny	Bacillus chagannorensis sp. nov., a moderate halophile from a soda lake in Inner Mongolia, China.	Carrasco IJ, Marquez MC, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.65162-0	2007

References

#7387	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18086
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28469	IJSEM 2084 2007 ( DOI 10.1099/ijs.0.65162-0 , PubMed 17766876 )
#32227	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28469
#37820	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118222	Collection of Institut Pasteur ; Curators of the CIP; CIP 109712
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alkalicoccus chagannorensis (DSM 18086, CCM 7371, CECT 7153)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000429725

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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