Name: Alkalicoccus chagannorensis CG-15
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1277

Type strain:

Species: Alkalicoccus chagannorensis

Strain Designation: CG-15

Culture col. no.: DSM 18086, CCM 7371, CECT 7153, CGMCC 1.6292, CIP 109712

Strain history: CIP <- 2007, CECT <- 2006, A. Ventosa, Sevilla Univ., Sevilla, Spain: strain CG-15

NCBI tax ID(s): 1121087 (strain), 427072 (species)

SI-ID 309527

CCM 7371, CECT 7153, CGMCC 1.6292, DSM 18086, CIP 109712, LMG 24740

Section

Alkalicoccus chagannorensis CG-15 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from lake Chagannor.

Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Alkalicoccus*
	Species	**Alkalicoccus chagannorensis**
	Full Scientific Name (LPSN)	Alkalicoccus chagannorensis (Carrasco et al. 2007) Gupta et al. 2020

Synonym

Bacillus chagannorensis

Information on morphological and physiological properties Morphology

[Ref.: #32227]	Gram stain	positive
[Ref.: #118222]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32227]	Cell length	2.0-3.0 µm

[Ref.: #32227]	Cell width	0.6-0.7 µm

[Ref.: #32227]	Cell shape	rod-shaped
[Ref.: #118222]	Cell shape	rod-shaped

[Ref.: #32227]	Motility	yes
[Ref.: #118222]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7387]

Culture medium

HORIKOSHI-1 MEDIUM WITH 10% NaCl (DSMZ Medium 1081a)

[Ref.: #7387]

Culture medium growth

[Ref.: #7387]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7387]

Culture medium composition

expand / minimize

[Ref.: #37820]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37820]

Culture medium growth

[Ref.: #37820]

Culture medium composition

expand / minimize

[Ref.: #118222]

Culture medium

CIP Medium 72

[Ref.: #118222]

Culture medium growth

[Ref.: #118222]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #118222]

Culture medium

CIP Medium 700

[Ref.: #118222]

Culture medium growth

[Ref.: #118222]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7387]	growth	30 °C
[Ref.: #32227]	growth	6-40 °C
[Ref.: #32227]	optimum	37 °C
[Ref.: #37820]	growth	37 °C

[Ref.: #7387]	Temperature range	mesophilic
[Ref.: #32227]	Temperature range	mesophilic
[Ref.: #37820]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32227]			optimum	8.5
[Ref.: #32227]			growth	5.8-11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32227]

Oxygen tolerance

facultative anaerobe

[Ref.: #32227]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %95

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32227]		NaCl		growth	3-20	%
[Ref.: #32227]		NaCl		optimum	7	%

[Ref.: #7387]	Murein short key	A31
[Ref.: #7387]	Murein types	A1gamma m-Dpm-direct

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32227]	arabinose ChEBI	+	carbon source
[Ref.: #32227]	butanol ChEBI	+	carbon source
[Ref.: #32227]	esculin ChEBI	+	hydrolysis
[Ref.: #32227]	ethanol ChEBI	+	carbon source
[Ref.: #32227]	fructose ChEBI	+	carbon source
[Ref.: #32227]	fucose ChEBI	+	carbon source
[Ref.: #32227]	galactose ChEBI	+	carbon source
[Ref.: #32227]	glucose ChEBI	+	carbon source
[Ref.: #32227]	lactose ChEBI	+	carbon source
[Ref.: #32227]	maltose ChEBI	+	carbon source
[Ref.: #32227]	mannitol ChEBI	+	carbon source
[Ref.: #32227]	mannose ChEBI	+	carbon source
[Ref.: #32227]	melibiose ChEBI	+	carbon source
[Ref.: #32227]	myo-inositol ChEBI	+	carbon source
[Ref.: #32227]	nitrate ChEBI	+	reduction
[Ref.: #118222]	nitrate ChEBI	-	reduction
[Ref.: #118222]	nitrite ChEBI	-	reduction
[Ref.: #32227]	propionate ChEBI	+	carbon source
[Ref.: #32227]	raffinose ChEBI	+	carbon source
[Ref.: #32227]	ribose ChEBI	+	carbon source
[Ref.: #32227]	salicin ChEBI	+	carbon source
[Ref.: #32227]	sorbitol ChEBI	+	carbon source
[Ref.: #32227]	trehalose ChEBI	+	carbon source
[Ref.: #32227]	xylitol ChEBI	+	carbon source
[Ref.: #32227]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #118222]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32227]	catalase	+	1.11.1.6
[Ref.: #118222]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118222]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #118222]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118222]	12054	-	-	+	-	-	+	+	-	-	+	-	+	+	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7387]	Sample type/isolated from	lake Chagannor
[Ref.: #7387]	Geographic location (country and/or sea, region)	Inner Mongolia
[Ref.: #7387]	Country	China
[Ref.: #7387]	Country ISO 3 Code	CHN
[Ref.: #7387]	Continent	Asia

[Ref.: #118222]	Sample type/isolated from	Environment, Soda lake
[Ref.: #118222]	Geographic location (country and/or sea, region)	Chagannor lake, inner Mongolia
[Ref.: #118222]	Country	China
[Ref.: #118222]	Country ISO 3 Code	CHN
[Ref.: #118222]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Lake (large)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM492159 (>99% sequence identity) for Alkalicoccus chagannorensis subclade from Microbeatlas

Aquatic Samples	44
Soil Samples	12
Animal Samples	7
Plant Samples
Total Samples	63

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7387]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118222]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7387]	Bacillus chagannorensis 16S rRNA gene, type strain CG-15T	AM492159	1467	ENA	427072 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alkalicoccus chagannorensis DSM 18086	GCA_000429725	scaffold	GenBank	1121087 tax ID	*
[Ref.: #66792]	Bacillus chagannorensis DSM 18086	1121087.3	wgs	PATRIC	1121087 tax ID	*
[Ref.: #66792]	Bacillus chagannorensis DSM 18086	2524614595	draft	JGI IMG/M	1121087 tax ID	*

[Ref.: #7387]

GC-content

53.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alkalicoccus chagannorensis DSM 18086 DSM 18086 NCBI: GCA_000429725.1
[Ref.: #69481]	spore-forming	yes	95	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alkalicoccus chagannorensis DSM 18086 DSM 18086 NCBI: GCA_000429725.1
[Ref.: #69480]	motile	yes	85.397	no
[Ref.: #69480]	flagellated	yes	64.854	no
[Ref.: #69480]	gram-positive	yes	90.369	yes
[Ref.: #69480]	anaerobic	no	98.573	yes
[Ref.: #69480]	aerobic	yes	85.223	yes
[Ref.: #69480]	halophile	yes	93.835	yes
[Ref.: #69480]	spore-forming	yes	73.067	yes
[Ref.: #69480]	thermophile	no	98.241	yes
[Ref.: #69480]	glucose-util	yes	91.215	yes
[Ref.: #69480]	glucose-ferment	no	89.876	no

Availability in culture collections External links

[Ref.: #7387]

Culture collection no.

DSM 18086, CCM 7371, CECT 7153, CGMCC 1.6292, CIP 109712

[Ref.: #70931]

SI-ID 309527

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillusurumqiensis sp. nov., a moderately haloalkaliphilic bacterium isolated from a salt lake.	Zhang S, Li Z, Yan Y, Zhang C, Li J, Zhao B	Int J Syst Evol Microbiol	10.1099/ijsem.0.001028	2016	*
Phylogeny	Bacillus chagannorensis sp. nov., a moderate halophile from a soda lake in Inner Mongolia, China.	Carrasco IJ, Marquez MC, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.65162-0	2007	*

References

#7387

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18086

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32227

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28469 (see below)

#37820 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70931

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309527.1 )

#118222 Collection of Institut Pasteur ; Curators of the CIP; CIP 109712

#28469

IJSEM 2084 2007 ( DOI 10.1099/ijs.0.65162-0 , PubMed 17766876 )

* These data were automatically processed and therefore are not curated

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Alkalicoccus chagannorensis DSM 18086 DSM 18086

Alkalicoccus chagannorensis DSM 18086 DSM 18086

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