Strain identifier
BacDive ID: 1278
Type strain:
Species: Alkalicoccobacillus murimartini
Strain history: <- LMG <- J. Heyrman, R-8459
NCBI tax ID(s): 171685 (species)
General
@ref: 7942
BacDive-ID: 1278
DSM-Number: 19154
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive, motile, rod-shaped
description: Alkalicoccobacillus murimartini DSM 19154 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from mural painting, St. Martin Church.
NCBI tax id
- NCBI tax id: 171685
- Matching level: species
strain history
- @ref: 7942
- history: <- LMG <- J. Heyrman, R-8459
doi: 10.13145/bacdive1278.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Alkalicoccobacillus
- species: Alkalicoccobacillus murimartini
- full scientific name: Alkalicoccobacillus murimartini (Borchert et al. 2007) Joshi et al. 2022
synonyms
@ref synonym 20215 Alkalihalobacillus murimartini 20215 Bacillus murimartini
@ref: 7942
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Alkalicoccobacillus
species: Alkalicoccobacillus murimartini
full scientific name: Alkalicoccobacillus murimartini (Borchert et al. 2007) Joshi et al. 2022
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
32239 | positive | 2.5 µm | 0.5 µm | rod-shaped | yes | |
69480 | yes | 97.405 | ||||
69480 | positive | 100 |
Culture and growth conditions
culture medium
- @ref: 7942
- name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31)
- growth: yes
- link: https://mediadive.dsmz.de/medium/31
- composition: Name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31) Composition: Agar 15.0 g/l Na2CO3 anhydrous 5.3 g/l Peptone 5.0 g/l NaHCO3 4.2 g/l Meat extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7942 | positive | growth | 28 | mesophilic |
32239 | positive | growth | 10-30 | |
32239 | positive | optimum | 17.5 | psychrophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
32239 | positive | growth | 07-10 | alkaliphile |
32239 | positive | optimum | 8.5 |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
32239 | yes | |
69481 | yes | 100 |
69480 | yes | 100 |
halophily
- @ref: 32239
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <4 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32239 | 17057 | cellobiose | + | carbon source |
32239 | 16947 | citrate | + | carbon source |
32239 | 28757 | fructose | + | carbon source |
32239 | 28260 | galactose | + | carbon source |
32239 | 5291 | gelatin | + | carbon source |
32239 | 17234 | glucose | + | carbon source |
32239 | 17754 | glycerol | + | carbon source |
32239 | 17716 | lactose | + | carbon source |
32239 | 17306 | maltose | + | carbon source |
32239 | 29864 | mannitol | + | carbon source |
32239 | 37684 | mannose | + | carbon source |
32239 | 28053 | melibiose | + | carbon source |
32239 | 506227 | N-acetylglucosamine | + | carbon source |
32239 | 33942 | ribose | + | carbon source |
32239 | 17814 | salicin | + | carbon source |
32239 | 30911 | sorbitol | + | carbon source |
32239 | 17992 | sucrose | + | carbon source |
32239 | 27082 | trehalose | + | carbon source |
32239 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
32239 | acid phosphatase | + | 3.1.3.2 |
32239 | alkaline phosphatase | + | 3.1.3.1 |
32239 | catalase | + | 1.11.1.6 |
32239 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 7942
- sample type: mural painting, St. Martin Church
- geographic location: Greene-Kreiensen
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Built environment | |
#Engineered | #Other | #Painting |
Safety information
risk assessment
- @ref: 7942
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7942
- description: Bacillus murimartini partial 16S rRNA gene, strain LMG 21005
- accession: AJ316316
- length: 1505
- database: ena
- NCBI tax ID: 171685
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bacillus murimartini strain LMG21005 | 171685.4 | wgs | patric | 171685 |
66792 | Alkalihalobacillus murimartini DSM 19154 | 2926524226 | draft | img | 171685 |
66792 | Bacillus murimartini LMG21005 | 2639763118 | draft | img | 171685 |
GC content
- @ref: 7942
- GC-content: 39.6
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 90.792 | no |
gram-positive | yes | 91.889 | yes |
anaerobic | no | 99.277 | no |
aerobic | yes | 90.226 | no |
halophile | yes | 84.907 | no |
spore-forming | yes | 96.928 | no |
glucose-util | yes | 88.12 | no |
flagellated | yes | 88.307 | no |
thermophile | no | 97.392 | yes |
glucose-ferment | no | 90.867 | no |
External links
@ref: 7942
culture collection no.: DSM 19154, LMG 21005, NCIMB 14102
straininfo link
- @ref: 70932
- straininfo: 88390
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 18048744 | Bacillus plakortidis sp. nov. and Bacillus murimartini sp. nov., novel alkalitolerant members of rRNA group 6. | Borchert MS, Nielsen P, Graeber I, Kaesler I, Szewzyk U, Pape T, Antranikian G, Schafer T | Int J Syst Evol Microbiol | 10.1099/ijs.0.65177-0 | 2007 | Animals, Bacillus/chemistry/*classification/genetics/*isolation & purification, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Germany, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plakortis/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Temperature | Genetics |
Genetics | 26494676 | Draft Genome Sequence of Bacillus murimartini LMG 21005T, an Alkalitolerant Bacterium Isolated from a Church Wall Mural in Germany. | Wang JP, Liu B, Liu GH, Xiao RF, Zheng XF, Shi H, Ge CB | Genome Announc | 10.1128/genomeA.01229-15 | 2015 | Phylogeny |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
7942 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19154) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19154 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
32239 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28480 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
70932 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID88390.1 | StrainInfo: A central database for resolving microbial strain identifiers |