Strain identifier

BacDive ID: 1278

Type strain: Yes

Species: Alkalicoccobacillus murimartini

Strain history: <- LMG <- J. Heyrman, R-8459

NCBI tax ID(s): 171685 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7942

BacDive-ID: 1278

DSM-Number: 19154

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Alkalicoccobacillus murimartini DSM 19154 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from mural painting, St. Martin Church.

NCBI tax id

  • NCBI tax id: 171685
  • Matching level: species

strain history

  • @ref: 7942
  • history: <- LMG <- J. Heyrman, R-8459

doi: 10.13145/bacdive1278.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Alkalicoccobacillus
  • species: Alkalicoccobacillus murimartini
  • full scientific name: Alkalicoccobacillus murimartini (Borchert et al. 2007) Joshi et al. 2022
  • synonyms

    @refsynonym
    20215Alkalihalobacillus murimartini
    20215Bacillus murimartini

@ref: 7942

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Alkalicoccobacillus

species: Alkalicoccobacillus murimartini

full scientific name: Alkalicoccobacillus murimartini (Borchert et al. 2007) Joshi et al. 2022

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32239positive2.5 µm0.5 µmrod-shapedyes
69480yes97.405
69480positive100

Culture and growth conditions

culture medium

  • @ref: 7942
  • name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/31
  • composition: Name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31) Composition: Agar 15.0 g/l Na2CO3 anhydrous 5.3 g/l Peptone 5.0 g/l NaHCO3 4.2 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7942positivegrowth28mesophilic
32239positivegrowth10-30
32239positiveoptimum17.5psychrophilic

culture pH

@refabilitytypepHPH range
32239positivegrowth07-10alkaliphile
32239positiveoptimum8.5

Physiology and metabolism

spore formation

@refspore formationconfidence
32239yes
69481yes100
69480yes100

halophily

  • @ref: 32239
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <4 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3223917057cellobiose+carbon source
3223916947citrate+carbon source
3223928757fructose+carbon source
3223928260galactose+carbon source
322395291gelatin+carbon source
3223917234glucose+carbon source
3223917754glycerol+carbon source
3223917716lactose+carbon source
3223917306maltose+carbon source
3223929864mannitol+carbon source
3223937684mannose+carbon source
3223928053melibiose+carbon source
32239506227N-acetylglucosamine+carbon source
3223933942ribose+carbon source
3223917814salicin+carbon source
3223930911sorbitol+carbon source
3223917992sucrose+carbon source
3223927082trehalose+carbon source
3223917632nitrate+reduction

enzymes

@refvalueactivityec
32239acid phosphatase+3.1.3.2
32239alkaline phosphatase+3.1.3.1
32239catalase+1.11.1.6
32239cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 7942
  • sample type: mural painting, St. Martin Church
  • geographic location: Greene-Kreiensen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment
#Engineered#Other#Painting

Safety information

risk assessment

  • @ref: 7942
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7942
  • description: Bacillus murimartini partial 16S rRNA gene, strain LMG 21005
  • accession: AJ316316
  • length: 1505
  • database: ena
  • NCBI tax ID: 171685

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bacillus murimartini strain LMG21005171685.4wgspatric171685
66792Alkalihalobacillus murimartini DSM 191542926524226draftimg171685
66792Bacillus murimartini LMG210052639763118draftimg171685

GC content

  • @ref: 7942
  • GC-content: 39.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileyes90.792no
gram-positiveyes91.889yes
anaerobicno99.277no
aerobicyes90.226no
halophileyes84.907no
spore-formingyes96.928no
glucose-utilyes88.12no
flagellatedyes88.307no
thermophileno97.392yes
glucose-fermentno90.867no

External links

@ref: 7942

culture collection no.: DSM 19154, LMG 21005, NCIMB 14102

straininfo link

  • @ref: 70932
  • straininfo: 88390

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18048744Bacillus plakortidis sp. nov. and Bacillus murimartini sp. nov., novel alkalitolerant members of rRNA group 6.Borchert MS, Nielsen P, Graeber I, Kaesler I, Szewzyk U, Pape T, Antranikian G, Schafer TInt J Syst Evol Microbiol10.1099/ijs.0.65177-02007Animals, Bacillus/chemistry/*classification/genetics/*isolation & purification, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Germany, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plakortis/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, TemperatureGenetics
Genetics26494676Draft Genome Sequence of Bacillus murimartini LMG 21005T, an Alkalitolerant Bacterium Isolated from a Church Wall Mural in Germany.Wang JP, Liu B, Liu GH, Xiao RF, Zheng XF, Shi H, Ge CBGenome Announc10.1128/genomeA.01229-152015Phylogeny

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7942Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19154)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19154
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32239Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2848028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70932Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID88390.1StrainInfo: A central database for resolving microbial strain identifiers