Name: Peribacillus kribbensis BT080
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1279

Type strain:

Species: Peribacillus kribbensis

Strain Designation: BT080

Culture col. no.: DSM 17871, KCTC 13934, BCRC 80031

Strain history: <- CJ Kim, KRIBB

NCBI tax ID(s): 1121092 (strain), 356658 (species)

SI-ID 403732

DSM 17871

Special Collections

Section

Peribacillus kribbensis BT080 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Peribacillus*
	Species	**Peribacillus kribbensis**
	Full Scientific Name (LPSN)	Peribacillus kribbensis (Lim et al. 2007) Patel and Gupta 2020

Synonym

Bacillus kribbensis

Information on morphological and physiological properties Morphology

[Ref.: #32266]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #32266]	Cell length	1.7 µm

[Ref.: #32266]	Cell width	1.5 µm

[Ref.: #32266]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #32266]	Motility	yes
[Ref.: #67771]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7208]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7208]

Culture medium growth

[Ref.: #7208]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7208]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7208]	growth	30 °C
[Ref.: #32266]	growth	13-47 °C
[Ref.: #32266]	optimum	31.5 °C
[Ref.: #67771]	growth	30-33 °C

	pH	Kind of pH		pH
[Ref.: #32266]			optimum	6
[Ref.: #32266]			growth	4.0-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32266]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #67771]	Type of spore	spore
[Ref.: #67771]	Ability of spore formation	yes
[Ref.: #32266]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32266]		NaCl		growth	0-6	%
[Ref.: #32266]		NaCl		optimum	1.5	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32266]	cellobiose ChEBI	+	carbon source
[Ref.: #32266]	fructose ChEBI	+	carbon source
[Ref.: #32266]	gelatin ChEBI	+	carbon source
[Ref.: #32266]	glucose ChEBI	+	carbon source
[Ref.: #32266]	lactose ChEBI	+	carbon source
[Ref.: #32266]	maltose ChEBI	+	carbon source
[Ref.: #32266]	melibiose ChEBI	+	carbon source
[Ref.: #32266]	ribose ChEBI	+	carbon source
[Ref.: #32266]	trehalose ChEBI	+	carbon source
[Ref.: #32266]	xylose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32266]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7208]	Sample type/isolated from	soil
[Ref.: #7208]	Country	Republic of Korea
[Ref.: #7208]	Country ISO 3 Code	KOR
[Ref.: #7208]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ280367 (>99% sequence identity) for Peribacillus kribbensis from Microbeatlas

Aquatic Samples	44
Soil Samples	550
Animal Samples	40
Plant Samples	5
Total Samples	639

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7208]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7208]	Bacillus kribbensis strain BT080 16S ribosomal RNA gene, partial sequence	DQ280367	1492	GenBank ENA	356658 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Peribacillus kribbensis DSM 17871	GCA_000430765	scaffold	GenBank ENA	1121092 tax ID	*
[Ref.: #66792]	Bacillus kribbensis DSM 17871	1121092.3	wgs	PATRIC	1121092 tax ID	*
[Ref.: #66792]	Bacillus kribbensis DSM 17871	2524023229	draft	JGI IMG/M	1121092 tax ID	*

[Ref.: #7208]

GC-content

43.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Peribacillus kribbensis DSM 17871 DSM 17871 NCBI: GCA_000430765.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Peribacillus kribbensis DSM 17871 DSM 17871 NCBI: GCA_000430765.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	80.525	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	89.823	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	76.075	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.949	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.804	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	82.085	no

Availability in culture collections External links

[Ref.: #7208]

Culture collection no.

DSM 17871, KCTC 13934, BCRC 80031

[Ref.: #70933]

SI-ID 403732

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus cavernae sp. nov. isolated from cave soil.	Feng L, Liu D, Sun X, Wang G, Li M	Int J Syst Evol Microbiol	10.1099/ijsem.0.000794	2015	*
Phylogeny	Bacillus deserti sp. nov., a novel bacterium isolated from the desert of Xinjiang, China.	Zhang L, Wu GL, Wang Y, Dai J, Fang CX	Antonie Van Leeuwenhoek	10.1007/s10482-010-9479-4	2010	*
Phylogeny	Bacillus kribbensis sp. nov., isolated from a soil sample in Jeju, Korea.	Lim JM, Jeon CO, Lee JR, Park DJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65227-0	2007	*

References

#7208

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17871

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32266

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28507 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70933

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403732.1 )

#28507

IJSEM 2912 2007 ( DOI 10.1099/ijs.0.65227-0 , PubMed 18048748 )

* These data were automatically processed and therefore are not curated

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Peribacillus kribbensis DSM 17871 DSM 17871

Peribacillus kribbensis DSM 17871 DSM 17871

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