Peribacillus kribbensis (DSM 17871, KCTC 13934, BT080)

Name: Peribacillus kribbensis (DSM 17871, KCTC 13934, BT080)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1279

Type strain

Strain Designation BT080

Culture col. no. DSM 17871 KCTC 13934 BT080 BCRC 80031

NCBI tax ID(s) 1121092 356658

Special Collections DSMZ KCTC Literature strains

History DSMZ <- Chang-Jin Kim <- Jee-Min Lim, BT080 KCTC <- CJ Kim, KRIBB

Links

Peribacillus kribbensis BT080 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

spore-forming Gram-positive motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403732

KCTC 13934,DSM 17871

@ref 20215

Last LPSN update 2026-05-29 08:25:13

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Peribacillus

Species Peribacillus kribbensis

Full scientific name Peribacillus kribbensis (Lim et al. 2007) Patel and Gupta 2020

Synonyms (2)

Bacillus kribbensis
"Paraperibacillus kribbensis"

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
32266	positive	1.7 µm	1.5 µm	rod-shaped
67771				rod-shaped
67771	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7208	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7208	positive	growth	30
32266	positive	growth	13-47
32266	positive	optimum	31.5
67771	positive	growth	30-33

Culture pH

@ref	Ability	Type	PH	PH range
32266	positive	optimum	6
32266	positive	growth	4.0-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32266	aerobe
67771	aerobe
125439	facultative anaerobe	93.964

Spore formation

@ref	Type of spore	Spore formation
32266
67771	spore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32266	NaCl	positive	growth	0-6 %
32266	NaCl	positive	optimum	1.5 %

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32266	17057 ChEBI	cellobiose	+	carbon source
32266	28757 ChEBI	fructose	+	carbon source
32266	5291 ChEBI	gelatin	+	carbon source
32266	17234 ChEBI	glucose	+	carbon source
32266	17716 ChEBI	lactose	+	carbon source
32266	17306 ChEBI	maltose	+	carbon source
32266	28053 ChEBI	melibiose	+	carbon source
32266	33942 ChEBI	ribose	+	carbon source
32266	27082 ChEBI	trehalose	+	carbon source
32266	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32266	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7208	soil		Republic of Korea	KOR	Asia
67771	From soil	Jeju	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ280367 (>99% sequence identity) for Peribacillus kribbensis from Microbeatlas

Aquatic Samples	44
Soil Samples	550
Animal Samples	40
Plant Samples	5
Total Samples	639

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7208	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM43076v1 assembly for Peribacillus kribbensis DSM 17871	scaffold	GCA_000430765	1121092.3	2524023229	1121092	65.08

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7208	Bacillus kribbensis strain BT080 16S ribosomal RNA gene, partial sequence	DQ280367	1492		356658

GC content

7208

GC-content (mol%)43.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM43076v1 assembly for Peribacillus kribbensis DSM 17871
NCBI: GCA_000430765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	93.96	no
125439	gram_stain	BacteriaNetⓘ	variable	77.14	no
125439	motility	BacteriaNetⓘ	yes	72.12	no
125439	spore_formation	BacteriaNetⓘ	yes	79.42	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Peribacillus kribbensis DSM 17871 DSM 17871
NCBI: GCA_000430765.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	80.53	yes
125438	anaerobic	anaerobicⓘ	no	89.82	yes
125438	aerobic	aerobicⓘ	yes	76.08	yes
125438	spore-forming	spore-formingⓘ	yes	89.95	no
125438	thermophilic	thermophileⓘ	no	93.80	yes
125438	flagellated	motile2+ⓘ	yes	82.09	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	The Biotechnological Potential of Plant Growth-Promoting Rhizobacteria Isolated from Maize (Zea mays L.) Cultivations in the San Martin Region, Peru.	Rios-Ruiz WF, Tarrillo-Chujutalli RE, Rojas-Garcia JC, Tuanama-Reategui C, Pompa-Vasquez DF, Zumaeta-Arevalo CA.	Plants (Basel)	10.3390/plants13152075	2024
Metabolism	The Exiguobacterium sibiricum 255-15 GtfC Enzyme Represents a Novel Glycoside Hydrolase 70 Subfamily of 4,6-alpha-Glucanotransferase Enzymes.	Gangoiti J, Pijning T, Dijkhuizen L.	Appl Environ Microbiol	10.1128/aem.03420-15	2016
Metabolism	Two novel psychrotolerant species, Bacillus psychrotolerans sp. nov. and Bacillus psychrodurans sp. nov., which contain ornithine in their cell walls.	Abd El-Rahman HA, Fritze D, Sproer C, Claus D.	Int J Syst Evol Microbiol	10.1099/00207713-52-6-2127	2002
Phylogeny	Bacillus cavernae sp. nov. isolated from cave soil.	Feng L, Liu D, Sun X, Wang G, Li M	Int J Syst Evol Microbiol	10.1099/ijsem.0.000794	2015
Phylogeny	Bacillus deserti sp. nov., a novel bacterium isolated from the desert of Xinjiang, China.	Zhang L, Wu GL, Wang Y, Dai J, Fang CX	Antonie Van Leeuwenhoek	10.1007/s10482-010-9479-4	2010
Phylogeny	Bacillus kribbensis sp. nov., isolated from a soil sample in Jeju, Korea.	Lim JM, Jeon CO, Lee JR, Park DJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65227-0	2007

References

#7208	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17871
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28507	IJSEM 2912 2007 ( DOI 10.1099/ijs.0.65227-0 , PubMed 18048748 )
#32266	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28507
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Peribacillus kribbensis (DSM 17871, KCTC 13934, BT080)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000430765

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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