Name: Pseudoalteromonas peptidolytica F12-50-A1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12687

Type strain:

Species: Pseudoalteromonas peptidolytica

Strain Designation: F12-50-A1, F12 50-A1

Culture col. no.: DSM 14001, MBIC 1416, NITE 00156, CIP 107066, MBIC 01416

Strain history: CIP <- 2001, A. Katsuta, Marine Biotechnol. Inst., Kamaishi, Iwate, Japan <- Dohmoto: strain F12 50-A1

NCBI tax ID(s): 61150 (species)

SI-ID 100877

DSM 14001, NBRC 101021, CIP 107066

Section

Pseudoalteromonas peptidolytica F12-50-A1 is a mesophilic, motile bacterium that was isolated from sea water.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas peptidolytica**
	Full Scientific Name (LPSN)	Pseudoalteromonas peptidolytica Venkateswaran and Dohmoto 2000

Information on morphological and physiological properties Morphology

[Ref.: #121669]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.986

[Ref.: #121669]	Cell shape	rod-shaped

[Ref.: #121669]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %98.034

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5213]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5213]

Culture medium growth

[Ref.: #5213]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5213]

Culture medium composition

expand / minimize

[Ref.: #42019]

Culture medium

Marine agar (MA)

[Ref.: #42019]

Culture medium growth

[Ref.: #42019]

Culture medium composition

expand / minimize

[Ref.: #121669]

Culture medium

CIP Medium 13

[Ref.: #121669]

Culture medium growth

[Ref.: #121669]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5213]		growth	28 °C
[Ref.: #42019]		growth	30 °C
[Ref.: #121669]		growth	25-41 °C
[Ref.: #121669]	no	growth	5 °C
[Ref.: #121669]	no	growth	10 °C

[Ref.: #5213]	Temperature range	mesophilic
[Ref.: #42019]	Temperature range	mesophilic
[Ref.: #121669]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.637

	Salt	Tested relation		Salt conc.
[Ref.: #121669]	NaCl		growth	2-8	%
[Ref.: #121669]	NaCl	no	growth	0	%
[Ref.: #121669]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121669]	esculin ChEBI	+	hydrolysis
[Ref.: #121669]	nitrate ChEBI	-	reduction
[Ref.: #121669]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #121669]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121669]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121669]	amylase	+
[Ref.: #121669]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121669]	caseinase	+	3.4.21.50
[Ref.: #121669]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121669]	gelatinase	+
[Ref.: #121669]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #121669]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121669]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121669]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121669]	oxidase	+
[Ref.: #121669]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121669]	tryptophan deaminase	-
[Ref.: #121669]	tween esterase	+
[Ref.: #121669]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121669]	10034	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5213]	Sample type/isolated from	sea water
[Ref.: #5213]	Geographic location (country and/or sea, region)	The sea of Japan
[Ref.: #5213]	Country	Japan
[Ref.: #5213]	Country ISO 3 Code	JPN
[Ref.: #5213]	Continent	Asia

[Ref.: #121669]	Sample type/isolated from	Environment, Seawater
[Ref.: #121669]	Country	Japan
[Ref.: #121669]	Country ISO 3 Code	JPN
[Ref.: #121669]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681334 (>99% sequence identity) for Pseudoalteromonas from Microbeatlas

Aquatic Samples	1221
Soil Samples	33
Animal Samples	253
Plant Samples	2
Total Samples	1509

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5213]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121669]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5213]	Pseudoalteromonas peptidysin 16S ribosomal RNA gene, partial sequence	AF007286	1448	ENA	61150 tax ID
[Ref.: #20218]	Pseudoalteromonas peptidolytica gene for 16S rRNA, partial sequence, strain: NBRC 101021	AB681334	1459	ENA	61150 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoalteromonas peptidolytica DSM 14001	GCA_012641745	contig	GenBank	61150 tax ID	*
[Ref.: #66792]	Pseudoalteromonas peptidolytica F12-50-A1	GCA_014858745	contig	GenBank	1315280 tax ID	*
[Ref.: #66792]	Pseudoalteromonas peptidolytica F12-50-A1	1315280.3	wgs	PATRIC	1315280 tax ID	*
[Ref.: #66792]	Pseudoalteromonas peptidolytica strain DSM 14001	61150.5	wgs	PATRIC	61150 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoalteromonas peptidolytica strain DSM 14001 PATRIC: 61150.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoalteromonas peptidolytica F12-50-A1 PATRIC: 1315280.3
[Ref.: #69480]	motile	yes	92.094	no
[Ref.: #69480]	gram-positive	no	99.12	no
[Ref.: #69480]	anaerobic	no	96.744	no
[Ref.: #69480]	halophile	yes	63.656	no
[Ref.: #69480]	spore-forming	no	93.809	no
[Ref.: #69480]	glucose-util	yes	89.265	no
[Ref.: #69480]	flagellated	yes	93.155	no
[Ref.: #69480]	thermophile	no	99.136	no
[Ref.: #69480]	aerobic	yes	85.682	no
[Ref.: #69480]	glucose-ferment	no	74.847	no

Availability in culture collections External links

[Ref.: #5213]

Culture collection no.

DSM 14001, MBIC 1416, NITE 00156, CIP 107066, MBIC 01416

[Ref.: #81899]

SI-ID 100877

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoalteromonas peptidolytica sp. nov., a novel marine mussel-thread-degrading bacterium isolated from the Sea of Japan.	Venkateswaran K, Dohmoto N	Int J Syst Evol Microbiol	10.1099/00207713-50-2-565	2000	*

References

#5213

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14001

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42019 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81899

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100877.1 )

#121669 Collection of Institut Pasteur ; Curators of the CIP; CIP 107066
* These data were automatically processed and therefore are not curated

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Pseudoalteromonas peptidolytica strain DSM 14001

Pseudoalteromonas peptidolytica F12-50-A1

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