Name: Myceligenerans xiligouense XLG910.2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12588

Type strain:

Species: Myceligenerans xiligouense

Strain Designation: XLG910.2

Culture col. no.: DSM 15700, CGMCC 1.3458, JCM 14112, NBRC 106321

Strain history: CGMCC 1.3458 <-- X. Cui XLG9A10.2.

NCBI tax ID(s): 253184 (species)

SI-ID 132788

CGMCC 1.3458, DSM 15700, JCM 14112, VTT E-042611

Special Collections

Section

Myceligenerans xiligouense XLG910.2 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from mud sample from Xiligou lake.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Promicromonosporaceae*
	Genus	*Myceligenerans*
	Species	**Myceligenerans xiligouense**
	Full Scientific Name (LPSN)	Myceligenerans xiligouense Cui et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #30188]	Gram stain	positive

[Ref.: #69480]	Motility	no Confidence in %95

[Ref.: #18393]	Colony color	Lemon yellow (1012)
[Ref.: #18393]	Incubation period	10-14 days
[Ref.: #18393]	Cultivation medium used	ISP 2

[Ref.: #18393]	Colony color	Lemon yellow (1012)
[Ref.: #18393]	Incubation period	10-14 days
[Ref.: #18393]	Cultivation medium used	ISP 3

[Ref.: #18393]	Colony color	Lemon yellow (1012)
[Ref.: #18393]	Incubation period	10-14 days
[Ref.: #18393]	Cultivation medium used	ISP 4

[Ref.: #18393]	Colony color	Beige (1001)
[Ref.: #18393]	Incubation period	10-14 days
[Ref.: #18393]	Cultivation medium used	ISP 5

[Ref.: #18393]	Colony color	Lemon yellow (1012)
[Ref.: #18393]	Incubation period	10-14 days
[Ref.: #18393]	Cultivation medium used	ISP 6

[Ref.: #18393]	Colony color	Beige (1001)
[Ref.: #18393]	Incubation period	10-14 days
[Ref.: #18393]	Cultivation medium used	ISP 7

[Ref.: #18393]	Multicellular complex forming ability	no
[Ref.: #18393]	Medium Name (multicellularity)	ISP 2

[Ref.: #18393]	Multicellular complex forming ability	no
[Ref.: #18393]	Medium Name (multicellularity)	ISP 3

[Ref.: #18393]	Multicellular complex forming ability	no
[Ref.: #18393]	Medium Name (multicellularity)	ISP 4

[Ref.: #18393]	Multicellular complex forming ability	no
[Ref.: #18393]	Medium Name (multicellularity)	ISP 5

[Ref.: #18393]	Multicellular complex forming ability	no
[Ref.: #18393]	Medium Name (multicellularity)	ISP 6

[Ref.: #18393]	Multicellular complex forming ability	no
[Ref.: #18393]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6066]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6066]

Culture medium growth

[Ref.: #6066]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6066]

Culture medium composition

expand / minimize

[Ref.: #18393]

Culture medium

ISP 2

[Ref.: #18393]

Culture medium growth

[Ref.: #18393]

Culture medium composition

expand / minimize

[Ref.: #18393]

Culture medium

ISP 3

[Ref.: #18393]

Culture medium growth

[Ref.: #18393]

Culture medium composition

expand / minimize

[Ref.: #18393]

Culture medium

ISP 4

[Ref.: #18393]

Culture medium growth

[Ref.: #18393]

Culture medium composition

expand / minimize

[Ref.: #18393]

Culture medium

ISP 5

[Ref.: #18393]

Culture medium growth

[Ref.: #18393]

Culture medium composition

expand / minimize

[Ref.: #18393]

Culture medium

ISP 6

[Ref.: #18393]

Culture medium growth

[Ref.: #18393]

Culture medium composition

expand / minimize

[Ref.: #18393]

Culture medium

ISP 7

[Ref.: #18393]

Culture medium growth

[Ref.: #18393]

Culture medium composition

expand / minimize

[Ref.: #6066]

Culture medium

LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)

[Ref.: #6066]

Culture medium growth

[Ref.: #6066]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6066]

Culture medium composition

expand / minimize

[Ref.: #6066]

Culture medium

OXOID NUTRIENT BROTH (DSMZ Medium 948)

[Ref.: #6066]

Culture medium growth

[Ref.: #6066]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6066]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6066]	growth	28 °C
[Ref.: #18393]	optimum	28 °C
[Ref.: #30188]	growth	4.0-50 °C
[Ref.: #30188]	optimum	25 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #30188]			optimum	8
[Ref.: #30188]			growth	4.0-13

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30188]

Oxygen tolerance

aerobe

[Ref.: #30188]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %94

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30188]		NaCl		growth	2.0-17.5	%
[Ref.: #30188]		NaCl		optimum	4.5	%

[Ref.: #6066]	Murein short key	A11.57
[Ref.: #6066]	Murein types	A4alpha L-Lys-L-Thr-D-Glu

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30188]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #18393]	arabinose ChEBI	-
[Ref.: #18393]	cellulose ChEBI	+
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #18393]	fructose ChEBI	-
[Ref.: #30188]	galacturonate ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #30188]	gluconate ChEBI	+	carbon source
[Ref.: #18393]	glucose ChEBI	+/-
[Ref.: #30188]	glycogen ChEBI	+	carbon source
[Ref.: #30188]	L-arabitol ChEBI	+	carbon source
[Ref.: #30188]	lactose ChEBI	+	carbon source
[Ref.: #18393]	mannitol ChEBI	+/-
[Ref.: #30188]	mannitol ChEBI	+	carbon source
[Ref.: #30188]	mannose ChEBI	+	carbon source
[Ref.: #30188]	melibiose ChEBI	+	carbon source
[Ref.: #18393]	myo-inositol ChEBI	-
[Ref.: #18393]	raffinose ChEBI	-
[Ref.: #30188]	raffinose ChEBI	+	carbon source
[Ref.: #18393]	rhamnose ChEBI	+
[Ref.: #30188]	rhamnose ChEBI	+	carbon source
[Ref.: #30188]	salicin ChEBI	+	carbon source
[Ref.: #18393]	sucrose ChEBI	+
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30188]	tween 40 ChEBI	+	carbon source
[Ref.: #30188]	tween 80 ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #18393]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18393]	79	not determinedn.d.	+	-	-	-	+	+	+	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	-	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18393]	103	not determinedn.d.	-	+	+	-	+	-	-	+	-	+	-	+	+	-	+	+	+	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	dTDPLrhamnose biosynthesis	100	8 of 8
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	80	8 of 10
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	purine metabolism	77.66	73 of 94
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	tryptophan metabolism	73.68	28 of 38
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	histidine metabolism	72.41	21 of 29
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	pyrimidine metabolism	71.11	32 of 45
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	oxidative phosphorylation	64.84	59 of 91
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	lysine metabolism	61.9	26 of 42
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	non-pathway related	60.53	23 of 38
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	aclacinomycin biosynthesis	57.14	4 of 7
[Ref.: #66794]	degradation of pentoses	57.14	16 of 28
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	degradation of sugar acids	56	14 of 25
[Ref.: #66794]	daunorubicin biosynthesis	55.56	5 of 9
[Ref.: #66794]	degradation of hexoses	55.56	10 of 18
[Ref.: #66794]	phenol degradation	55	11 of 20
[Ref.: #66794]	3-phenylpropionate degradation	53.33	8 of 15
[Ref.: #66794]	polyamine pathway	52.17	12 of 23
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	myo-inositol biosynthesis	50	5 of 10
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	carotenoid biosynthesis	40.91	9 of 22
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	degradation of sugar alcohols	37.5	6 of 16
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	35.29	6 of 17
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	ascorbate metabolism	27.27	6 of 22
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6066]	Sample type/isolated from	mud sample from Xiligou lake
[Ref.: #6066]	Geographic location (country and/or sea, region)	Xiligou
[Ref.: #6066]	Country	China
[Ref.: #6066]	Country ISO 3 Code	CHN
[Ref.: #6066]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Pasture near an alkaline salt marsh soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Qinghai Province, western China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY354285 (>99% sequence identity) for Myceligenerans xiligouense from Microbeatlas

Aquatic Samples	77
Soil Samples	129
Animal Samples	84
Plant Samples	9
Total Samples	299

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18393]	Biosafety level	1	German classification
[Ref.: #6066]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6066]	Myceligeneris xiligouensis strain XLG9A10.2 16S ribosomal RNA gene, partial sequence	AY354285	1538	GenBank ENA	253184 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Myceligenerans xiligouense DSM 15700	GCA_003814695	contig	GenBank ENA	253184 tax ID
[Ref.: #66792]	Myceligenerans xiligouense strain DSM 15700	253184.3	wgs	PATRIC	253184 tax ID	*
[Ref.: #66792]	Myceligenerans xiligouense DSM 15700	2784132080	draft	JGI IMG/M	253184 tax ID	*

[Ref.: #6066]	GC-content	71.9 mol%
[Ref.: #67770]	GC-content	71.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Myceligenerans xiligouense strain DSM 15700 PATRIC: 253184.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	94	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Myceligenerans xiligouense strain DSM 15700 PATRIC: 253184.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.201	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.557	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	68.84	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.096	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	95	no

Availability in culture collections External links

[Ref.: #6066]

Culture collection no.

DSM 15700, CGMCC 1.3458, JCM 14112, NBRC 106321

[Ref.: #81802]

SI-ID 132788

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Myceligenerans salitolerans sp. nov., a halotolerant actinomycete isolated from a salt lake in Xinjiang, China.	Guan TW, Wu N, Tang SK, Che ZM, Chen XG	Extremophiles	10.1007/s00792-012-0502-8	2012	*
Phylogeny	Myceligenerans crystallogenes sp. nov., isolated from Roman catacombs.	Groth I, Schumann P, Schutze B, Gonzalez JM, Laiz L, Suihko ML, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.63756-0	2006	*
Phylogeny	Myceligenerans xiligouense gen. nov., sp. nov., a novel hyphae-forming member of the family Promicromonosporaceae.	Cui X, Schumann P, Stackebrandt E, Kroppenstedt RM, Pukall R, Xu L, Rohde M, Jiang C	Int J Syst Evol Microbiol	10.1099/ijs.0.03046-0	2004	*

References

#6066

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15700

#18393

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30188

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26535 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81802

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID132788.1 )

#26535

IJSEM 1287 2004 ( DOI 10.1099/ijs.0.03046-0 , PubMed 15280304 )

* These data were automatically processed and therefore are not curated

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Myceligenerans xiligouense strain DSM 15700

Myceligenerans xiligouense strain DSM 15700

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