Name: Isoptericola nanjingensis H17
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12587

Type strain:

Species: Isoptericola nanjingensis

Strain Designation: H17

Culture col. no.: DSM 24300, CCTCC AB 2011005, JCM 19549

Strain history: DSM 24300 <-- H. Zhi H17.

NCBI tax ID(s): 903413 (species)

SI-ID 400588

DSM 24300

Section

Isoptericola nanjingensis H17 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
ovoid-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Promicromonosporaceae*
	Genus	*Isoptericola*
	Species	**Isoptericola nanjingensis**
	Full Scientific Name (LPSN)	Isoptericola nanjingensis Huang et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30304]	Gram stain	positive

[Ref.: #30304]	Cell shape	ovoid-shaped

[Ref.: #30304]	Motility	no

[Ref.: #30304]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17625]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #17625]

Culture medium growth

[Ref.: #17625]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17625]

Culture medium composition

expand / minimize

[Ref.: #17625]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #17625]

Culture medium growth

[Ref.: #17625]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17625]

Culture medium composition

expand / minimize

[Ref.: #17625]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17625]

Culture medium growth

[Ref.: #17625]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17625]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17625]	growth	28 °C
[Ref.: #30304]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #17625]	Temperature range	mesophilic
[Ref.: #30304]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30304]			optimum	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30304]

Oxygen tolerance

aerobe

[Ref.: #30304]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30304]		NaCl		optimum	3	%

[Ref.: #17625]	Murein short key	A11.31
[Ref.: #17625]	Murein types	A4alpha L-Lys-D-Asp

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30304]	L-arabitol ChEBI	+	carbon source
[Ref.: #30304]	lactose ChEBI	+	carbon source
[Ref.: #30304]	mannitol ChEBI	+	carbon source
[Ref.: #30304]	melibiose ChEBI	+	carbon source
[Ref.: #30304]	raffinose ChEBI	+	carbon source
[Ref.: #30304]	rhamnose ChEBI	+	carbon source
[Ref.: #30304]	ribose ChEBI	+	carbon source
[Ref.: #30304]	trehalose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30304]		alkaline phosphatase	+	3.1.3.1
[Ref.: #30304]		alpha-galactosidase	+	3.2.1.22

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17625]	Sample type/isolated from	soil
[Ref.: #17625]	Geographic location (country and/or sea, region)	Jiangning, Nanjing, Houhan Road
[Ref.: #17625]	Country	China
[Ref.: #17625]	Country ISO 3 Code	CHN
[Ref.: #17625]	Continent	Asia
[Ref.: #17625]	Geographic location	31.7833°/118.7330°

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Nanjing, Jiangsu
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ222356 (>99% sequence identity) for Isoptericola from Microbeatlas

Aquatic Samples	100
Soil Samples	472
Animal Samples	365
Plant Samples	124
Total Samples	1061

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17625]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17625]	Isoptericola nanjingensis strain H17 16S ribosomal RNA gene, partial sequence	HQ222356	1404	ENA	903413 tax ID

[Ref.: #17625]	GC-content	72.4 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30304]	GC-content	72.4 mol%

Availability in culture collections External links

[Ref.: #17625]

Culture collection no.

DSM 24300, CCTCC AB 2011005, JCM 19549

[Ref.: #81801]

SI-ID 400588

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isoptericola cucumis sp. nov., isolated from the root tissue of cucumber (Cucumis sativus).	Kampfer P, Glaeser SP, Kloepper JW, Hu CH, McInroy JA, Martin K, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001055	2016	*
Phylogeny	Isoptericola nanjingensis sp. nov., a mineral-weathering bacterium.	Huang Z, Sheng XF, Zhao F, He LY, Huang J, Wang Q	Int J Syst Evol Microbiol	10.1099/ijs.0.033043-0	2011	*

References

#17625

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24300

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30304

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26645 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81801

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400588.1 )

#26645

IJSEM 971 2012 ( DOI 10.1099/ijs.0.033043-0 , PubMed 21669920 )

* These data were automatically processed and therefore are not curated

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