Prevotella oris (JCM 12252, DSM 18711, ATCC 33573)

Name: Prevotella oris (JCM 12252, DSM 18711, ATCC 33573)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12550

Type strain

Culture col. no. JCM 12252 DSM 18711 ATCC 33573 CCUG 15405 CIP 104480 4 more

NCBI tax ID(s) 1122989 28135

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- CIP <- J.-P. Carlier <- ATCC <- L. V. Holdeman JCM <-- ATCC 33573 <-- L. V. Holdeman VPI D1A-1A. CIP <- 1996, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 10115 <- ATCC <- L.V. Holdeman: strain VPI DIA-1A, Bacteroides oris

Links

Prevotella oris JCM 12252 is an anaerobe bacterium that was isolated from gingival crevice.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 40565

ATCC 33573,CCUG 15405,JCM 8540,NCTC 13071,JCM 12252,CIP 104480,DSM 18711

@ref 20215

Last LPSN update 2026-05-29 08:27:50

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Prevotellaceae

Genus Prevotella

Species Prevotella oris

Full scientific name Prevotella oris (Holdeman et al. 1982) Shah and Collins 1990

Synonyms (2)

Segatella oris
Bacteroides oris

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	90.5
125439	99.407	negative
125438	97.327	negative

Colony morphology

46245

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7672	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
7672	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)	Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
41190	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
121445	CIP Medium 20	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7672	positive	growth	37
41190	positive	growth	37
46245	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
7672	anaerobe
46245	anaerobe
125438	anaerobe	93.092

Spore formation

@ref	Spore formation	Confidence
125439		99.971
125438		91.972

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	+	3.2.1.55	from API rID32A
68380	alpha-fucosidase	+	3.2.1.51	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
7672	-	-	+	+	-	+	+	+	-	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-
7672	-	+	+	+	-	+	+	+	-	+	+/-	+/-	-	+	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Gingiva

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
7672	gingival crevice
46245	Human gingival crevice with moderate periodontitis	Homo sapiens
67770	Gingival crevice with periodontitis
121445	Human, Gingival crevice with moderate suppuration	Homo sapiens	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence NR_044628 (>99% sequence identity) for Prevotella oris subclade from Microbeatlas

Aquatic Samples	7
Soil Samples	14
Animal Samples	1690
Plant Samples	5
Total Samples	1716

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7672	2	Risk group (German classification) According to TRBA 466
121445	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	52295_B01 assembly for Segatella oris NCTC13071	complete	GCA_900637655	28135.5	8046250576	28135	98.66
67770	ASM37768v1 assembly for Segatella oris DSM 18711 = JCM 12252	scaffold	GCA_000377685	1122989.3	2517572237	1122989	68.27
67770	ASM61350v1 assembly for Segatella oris DSM 18711 = JCM 12252	contig	GCA_000613505	1235820.4	2579778709	1122989	18.85

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
7672	Segatella oris strain ATCC 33573 16S ribosomal RNA, partial sequence	NR_044628	1480	28135
67770	Prevotella oris gene for 16S ribosomal RNA, partial sequence, strain: JCM 8540	AB547701	1481	28135
67770	Prevotella oris strain ATCC 33573 16S ribosomal RNA gene, partial sequence	L16474	1480	28135
124043	Prevotella oris gene for 16S ribosomal RNA, partial sequence, strain: JCM 12252.	AB547700	1481	28135

GC content

@ref	GC-content (mol%)	Method
7672	43.8	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: 52295_B01 assembly for Segatella oris NCTC13071
BV-BRC: 28135.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	80.65	no
125439	motility	BacteriaNetⓘ	no	77.74	no
125439	gram_stain	BacteriaNetⓘ	negative	99.41	no
125439	spore_formation	BacteriaNetⓘ	no	99.97	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Prevotella oris NCTC13071
NCBI: GCA_900637655.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.33	no
125438	anaerobic	anaerobicⓘ	yes	93.09	yes
125438	aerobic	aerobicⓘ	no	96.25	yes
125438	spore-forming	spore-formingⓘ	no	91.97	no
125438	thermophilic	thermophileⓘ	no	94.13	yes
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Investigation of Intestinal Microbiota and Short-Chain Fatty Acids in Colorectal Cancer and Detection of Biomarkers.	Saylam E, Ozden O, Yerlikaya FH, Sivrikaya A, Yormaz S, Arslan U, Topkafa M, Macin S.	Pathogens	10.3390/pathogens14090953	2025
Enzymology	Identification of proteases from periodontopathogenic bacteria as activators of latent human neutrophil and fibroblast-type interstitial collagenases.	Sorsa T, Ingman T, Suomalainen K, Haapasalo M, Konttinen YT, Lindy O, Saari H, Uitto VJ	Infect Immun	10.1128/iai.60.11.4491-4495.1992	1992
Phylogeny	Prevotella shahii sp. nov. and Prevotella salivae sp. nov., isolated from the human oral cavity.	Sakamoto M, Suzuki M, Huang Y, Umeda M, Ishikawa I, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.02876-0	2004

References

#7672	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18711
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#41190	; Curators of the CIP;
#46245	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15405
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121445	Collection of Institut Pasteur ; Curators of the CIP; CIP 104480
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Prevotella oris (JCM 12252, DSM 18711, ATCC 33573)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900637655

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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