Name: Segatella oris JCM 12252
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12550

Type strain:

Species: Segatella oris

Culture col. no.: JCM 12252, DSM 18711, ATCC 33573, CCUG 15405, CIP 104480, AIP 10115, JCM 8540, NCTC 13071, VPI D1A-1A

Strain history: CIP <- 1996, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 10115 <- ATCC <- L.V. Holdeman: strain VPI DIA-1A, Bacteroides oris

NCBI tax ID(s): 28135 (species)

SI-ID 40565

ATCC 33573, CCUG 15405, JCM 8540, NCTC 13071, JCM 12252, CIP 104480, DSM 18711

Special Collections

Section

Segatella oris JCM 12252 is an anaerobe bacterium that was isolated from gingival crevice.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Segatella*
	Species	**Segatella oris**
	Full Scientific Name (LPSN)	Segatella oris (Holdeman et al. 1982) Hitch et al. 2023

	Synonym	Bacteroides oris
	Synonym	Prevotella oris

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.327

[Ref.: #69480]	Motility	no Confidence in %90.5

[Ref.: #46245]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7672]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #7672]

Culture medium growth

[Ref.: #7672]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7672]

Culture medium composition

expand / minimize

[Ref.: #7672]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #7672]

Culture medium growth

[Ref.: #7672]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7672]

Culture medium composition

expand / minimize

[Ref.: #41190]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #41190]

Culture medium growth

[Ref.: #41190]

Culture medium composition

expand / minimize

[Ref.: #121445]

Culture medium

CIP Medium 20

[Ref.: #121445]

Culture medium growth

[Ref.: #121445]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7672]	growth	37 °C
[Ref.: #41190]	growth	37 °C
[Ref.: #46245]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7672]	Oxygen tolerance	anaerobe
[Ref.: #46245]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %93.092

[Ref.: #69480]	Ability of spore formation	no Confidence in %91.972
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	+	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #7672]	13182	-	-	+	+	-	+	+	+	-	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-
[Ref.: #7672]	12254	-	+	+	+	-	+	+	+	-	+	+/-	+/-	-	+	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7672]	Sample type/isolated from	gingival crevice

[Ref.: #46245]	Sample type/isolated from	Human gingival crevice with moderate periodontitis

[Ref.: #67770]	Sample type/isolated from	Gingival crevice with periodontitis

[Ref.: #121445]	Sample type/isolated from	Human, Gingival crevice with moderate suppuration
[Ref.: #121445]	Country	United States of America
[Ref.: #121445]	Country ISO 3 Code	USA
[Ref.: #121445]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Oral cavity and airways

#Gingiva

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_044628 (>99% sequence identity) for Prevotella oris subclade from Microbeatlas

Aquatic Samples	7
Soil Samples	14
Animal Samples	1690
Plant Samples	5
Total Samples	1716

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7672]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121445]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prevotella oris gene for 16S ribosomal RNA, partial sequence, strain: JCM 8540	AB547701	1481	GenBank ENA	28135 tax ID
[Ref.: #67770]	Prevotella oris strain ATCC 33573 16S ribosomal RNA gene, partial sequence	L16474	1480	GenBank ENA	28135 tax ID
[Ref.: #7672]	Segatella oris strain ATCC 33573 16S ribosomal RNA, partial sequence	NR_044628	1480	GenBank ENA	28135 tax ID
[Ref.: #124043]	Prevotella oris gene for 16S ribosomal RNA, partial sequence, strain: JCM 12252.	AB547700	1481	GenBank ENA	28135 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prevotella oris DSM 18711 = JCM 12252	GCA_000613505	contig	GenBank ENA	1122989 tax ID
[Ref.: #67770]	Prevotella oris DSM 18711 = JCM 12252	GCA_000377685	scaffold	GenBank ENA	1122989 tax ID
[Ref.: #66792]	Prevotella oris DSM 18711	1122989.3	wgs	PATRIC	1122989 tax ID	*
[Ref.: #66792]	Prevotella oris JCM 12252	1235820.4	wgs	PATRIC	1122989 tax ID	*
[Ref.: #66792]	Prevotella oris strain NCTC13071	28135.5	complete	PATRIC	28135 tax ID	*
[Ref.: #66792]	Prevotella oris JCM 12252	2579778709	draft	JGI IMG/M	1122989 tax ID	*

[Ref.: #7672]

GC-content

43.8 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Prevotella oris NCTC13071 NCBI: GCA_900637655.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella oris NCTC13071 NCBI: GCA_900637655.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.327	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	93.092	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	96.245	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.972	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.128	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	no

Availability in culture collections External links

[Ref.: #7672]

Culture collection no.

JCM 12252, DSM 18711, ATCC 33573, CCUG 15405, CIP 104480, AIP 10115, JCM 8540, NCTC 13071, VPI D1A-1A

[Ref.: #81765]

SI-ID 40565

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prevotella shahii sp. nov. and Prevotella salivae sp. nov., isolated from the human oral cavity.	Sakamoto M, Suzuki M, Huang Y, Umeda M, Ishikawa I, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.02876-0	2004	*
Enzymology	Identification of proteases from periodontopathogenic bacteria as activators of latent human neutrophil and fibroblast-type interstitial collagenases.	Sorsa T, Ingman T, Suomalainen K, Haapasalo M, Konttinen YT, Lindy O, Saari H, Uitto VJ	Infect Immun	10.1128/iai.60.11.4491-4495.1992	1992	*

References

#7672

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18711

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41190 ; Curators of the CIP;
#46245 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15405

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81765

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40565.1 )

#121445 Collection of Institut Pasteur ; Curators of the CIP; CIP 104480

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Prevotella oris NCTC13071

Prevotella oris NCTC13071

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