Prevotella pallens (DSM 18710, ATCC 700821, CCUG 39484)

Name: Prevotella pallens (DSM 18710, ATCC 700821, CCUG 39484)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12549

Type strain

Culture col. no. DSM 18710 ATCC 700821 CCUG 39484 CIP 105551 NCTC 13042 2 more

NCBI tax ID(s) 997353 60133

Special Collections DSMZ CCUG JCM CIP

History <- CIP; CIP 105551 <- E. Könönen; AHN10371 1998, E. Könönen, Nat. Public Health Inst., Helsinki, Finland: strain AHN 10371 E. Könönen AHN 10371. CIP <- 1998, E. Könönen, National Public Health Inst., Helsinki, Finland: strain AHN 10371

Links

Prevotella pallens DSM 18710 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from human saliva, young child.

Gram-negative rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 44156

ATCC 700821,NCTC 13042,CCUG 39484,JCM 11140,CIP 105551,DSM 18710

@ref 20215

Last LPSN update 2026-02-09 11:20:52

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Prevotellaceae

Genus Prevotella

Species Prevotella pallens

Full scientific name Prevotella pallens Könönen et al. 1998

BacDive ID	Other strains from **Prevotella pallens** (1)	Type strain
150281	P. pallens CCUG 39483

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
121509	negative	rod-shaped
125438			91
125438	negative		94.719

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7671	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)	Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
34054	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
121509	CIP Medium 20	Medium recipe at CIP
7671	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
7671	positive	growth	37
34054	positive	growth	37
54814	positive	growth	37
67770	positive	growth	37
121509	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
7671	anaerobe
54814	anaerobe

Spore formation

@ref	Spore formation	Confidence
125438		92.972
125439		98.1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	27897 ChEBI	tryptophan	+	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	+	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	+	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
7671	-	+	-	-	-	+	-	-	-	-	-	+	-	-	-	+	+	+	-	+	-	-	-	-	+	-	-	+	-
7671	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Child
#Host Body Product	#Oral cavity and Airways	#Saliva

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
7671	human saliva, young child	Helsinki	Finland	FIN	Europe
54814	Human saliva,young child	Helsinki ?	Finland	FIN	Europe
67770	Human oral cavity
121509	Human, Saliva		Finland	FIN	Europe	1992

Taxonmaps

69479

Global distribution of 16S sequence Y13105 (>99% sequence identity) for Prevotella pallens subclade from Microbeatlas

Aquatic Samples	1248
Soil Samples	1018
Animal Samples	63428
Plant Samples	489
Total Samples	66183

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7671	2	Risk group (German classification) According to TRBA 466
121509	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM326919v1 assembly for Prevotella pallens DSM 18710	scaffold	GCA_003269195	60133.3	2695420923	60133	61.58
67770	ASM22025v1 assembly for Prevotella pallens ATCC 700821	scaffold	GCA_000220255	997353.4	651324090	997353	45.85

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
7671	Prevotella pallens strain 10371 16S ribosomal RNA, partial sequence	NR_026417	1454	60133
67770	Prevotella pallens gene for 16S ribosomal RNA, partial sequence, strain: JCM 11140	AB547703	1492	997353
67770	Prevotella pallens 16S rRNA gene, strain 10371	Y13105	1454	997353

GC content

@ref	GC-content (mol%)	Method
7671	37.4	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Prevotella pallens ATCC 700821
NCBI: GCA_000220255

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.10	no
125439	motility	BacteriaNetⓘ	no	79.50	no
125439	gram_stain	BacteriaNetⓘ	negative	87.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	75.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Prevotella pallens ATCC 700821
PATRIC: 997353.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.72	no
125438	anaerobic	anaerobicⓘ	yes	88.96	yes
125438	aerobic	aerobicⓘ	no	92.44	yes
125438	spore-forming	spore-formingⓘ	no	92.97	no
125438	thermophilic	thermophileⓘ	no	97.75	no
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Evaluation of co-circulating pathogens and microbiome from COVID-19 infections.	Thissen JB, Morrison MD, Mulakken N, Nelson WC, Daum C, Messenger S, Wadford DA, Jaing C.	PLoS One	10.1371/journal.pone.0278543	2022
	Biofilm Composition Changes During Orthodontic Clear Aligners Compared to Multibracket Appliances: A Systematic Review.	Belanche Monterde A, Flores-Fraile J, Perez Pevida E, Zubizarreta-Macho A.	Microorganisms	10.3390/microorganisms13051039	2025
	Stannous fluoride forms aggregates between outer and inner membranes leading to membrane rupture of Porphyromonas gingivalis and Prevotella pallens.	Xie S, Iberi V, Boissy Y, Tansky CS, Huggins T, Ramji N, Biesbrock AR.	Front Oral Health	10.3389/froh.2024.1427008	2024
	Streptococcus sobrinus as a Predominant Oral Bacteria Related to the Occurrence of Dental Caries in Polish Children at 12 Years Old.	Korona-Glowniak I, Skawinska-Bednarczyk A, Wrobel R, Pietrak J, Tkacz-Ciebiera I, Maslanko-Switala M, Krawczyk D, Bakiera A, Borek A, Malm A, Mielnik-Blaszczak M.	Int J Environ Res Public Health	10.3390/ijerph192215005	2022
Genetics	Genomic Insights into the Distribution of Peptidases and Proteolytic Capacity among Prevotella and Paraprevotella Species.	Patra AK, Yu Z.	Microbiol Spectr	10.1128/spectrum.02185-21	2022
Phylogeny	Characterization of the Oral Microbiome Among Children With Type 1 Diabetes Compared With Healthy Children.	Moskovitz M, Nassar M, Moriel N, Cher A, Faibis S, Ram D, Zangen D, Yassour M, Steinberg D.	Front Microbiol	10.3389/fmicb.2021.756808	2021
	Identification of Prevotella Oralis as a possible target antigen in children with Enthesitis related arthritis.	Stoll ML, Duck LW, Chang MH, Colbert RA, Nigrovic PA, Thompson SD, Elson CO.	Clin Immunol	10.1016/j.clim.2020.108463	2020
Phylogeny	RiboFR-Seq: a novel approach to linking 16S rRNA amplicon profiles to metagenomes.	Zhang Y, Ji P, Wang J, Zhao F.	Nucleic Acids Res	10.1093/nar/gkw165	2016
Transcriptome	Gene expression of bacterial collagenolytic proteases in root caries.	Dame-Teixeira N, Parolo CCF, Maltz M, Rup AG, Devine DA, Do T.	J Oral Microbiol	10.1080/20002297.2018.1424475	2018
Metabolism	Intra-Genomic Heterogeneity in 16S rRNA Genes in Strictly Anaerobic Clinical Isolates from Periodontal Abscesses.	Chen J, Miao X, Xu M, He J, Xie Y, Wu X, Chen G, Yu L, Zhang W.	PLoS One	10.1371/journal.pone.0130265	2015
Enzymology	Use of the genomic subtractive hybridization technique to develop a real-time PCR assay for quantitative detection of Prevotella spp. in oral biofilm samples.	Nagashima S, Yoshida A, Suzuki N, Ansai T, Takehara T.	J Clin Microbiol	10.1128/jcm.43.6.2948-2951.2005	2005
Phylogeny	Uncultivated phylotypes and newly named species associated with primary and persistent endodontic infections.	Siqueira JF, Rocas IN.	J Clin Microbiol	10.1128/jcm.43.7.3314-3319.2005	2005
Enzymology	Loop-mediated isothermal amplification method for rapid detection of the periodontopathic bacteria Porphyromonas gingivalis, Tannerella forsythia, and Treponema denticola.	Yoshida A, Nagashima S, Ansai T, Tachibana M, Kato H, Watari H, Notomi T, Takehara T.	J Clin Microbiol	10.1128/jcm.43.5.2418-2424.2005	2005
Genetics	Metagenomic sequencing of bile from gallstone patients to identify different microbial community patterns and novel biliary bacteria.	Shen H, Ye F, Xie L, Yang J, Li Z, Xu P, Meng F, Li L, Chen Y, Bo X, Ni M, Zhang X.	Sci Rep	10.1038/srep17450	2015
Metabolism	Determination and production of antimicrobial compounds by Aspergillus clavatonanicus strain MJ31, an endophytic fungus from Mirabilis jalapa L. using UPLC-ESI-MS/MS and TD-GC-MS analysis.	Mishra VK, Passari AK, Chandra P, Leo VV, Kumar B, Uthandi S, Thankappan S, Gupta VK, Singh BP.	PLoS One	10.1371/journal.pone.0186234	2017
Phylogeny	Occurrence of Ochroconis and Verruconis species in clinical specimens from the United States.	Giraldo A, Sutton DA, Samerpitak K, de Hoog GS, Wiederhold NP, Guarro J, Gene J.	J Clin Microbiol	10.1128/jcm.02027-14	2014
Enzymology	Development and evaluation of a rapid latex agglutination test using a monoclonal antibody to identify Candida dubliniensis colonies.	Marot-Leblond A, Beucher B, David S, Nail-Billaud S, Robert R.	J Clin Microbiol	10.1128/jcm.44.1.138-142.2006	2006
	In vitro Characterization of Biofilm Formation in Prevotella Species.	Albaghdadi SZ, Altaher JB, Drobiova H, Bhardwaj RG, Karched M.	Front Oral Health	10.3389/froh.2021.724194	2021
	The Effect of Oral Care Product Ingredients on Oral Pathogenic Bacteria Transcriptomics Through RNA-Seq.	Hu P, Xie S, Shi B, Tansky CS, Circello B, Sagel PA, Schneiderman E, Biesbrock AR.	Microorganisms	10.3390/microorganisms12122668	2024
Pathogenicity	Mechanisms of reduced susceptibility and genotypic prediction of antibiotic resistance in Prevotella isolated from cystic fibrosis (CF) and non-CF patients.	Sherrard LJ, Schaible B, Graham KA, McGrath SJ, McIlreavey L, Hatch J, Wolfgang MC, Muhlebach MS, Gilpin DF, Schneiders T, Elborn JS, Tunney MM.	J Antimicrob Chemother	10.1093/jac/dku192	2014
Phylogeny	Prevotella aurantiaca sp. nov., isolated from the human oral cavity.	Sakamoto M, Suzuki N, Okamoto M	Int J Syst Evol Microbiol	10.1099/ijs.0.012831-0	2009
Phylogeny	Prevotella falsenii sp. nov., a Prevotella intermedia-like organism isolated from monkey dental plaque.	Sakamoto M, Kumada H, Hamada N, Takahashi Y, Okamoto M, Bakir MA, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.002626-0	2009
Phylogeny	Phylogenetic characterization and proposal of a new pigmented species to the genus Prevotella: Prevotella pallens sp. nov.	Kononen E, Eerola E, Frandsen EV, Jalava J, Matto J, Salmenlinna S, Jousimies-Somer H	Int J Syst Bacteriol	10.1099/00207713-48-1-47	1998

References

#7671	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18710
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#34054	; Curators of the CIP;
#54814	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 39484
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121509	Collection of Institut Pasteur ; Curators of the CIP; CIP 105551
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Prevotella pallens (DSM 18710, ATCC 700821, CCUG 39484)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003269195

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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