Name: Prevotella pallens DSM 18710
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12549

Type strain:

Species: Prevotella pallens

Culture col. no.: DSM 18710, ATCC 700821, CCUG 39484, CIP 105551, NCTC 13042, AHN 10371, JCM 11140

Strain history: CIP <- 1998, E. Könönen, National Public Health Inst., Helsinki, Finland: strain AHN 10371

NCBI tax ID(s): 997353 (strain), 60133 (species)

SI-ID 44156

ATCC 700821, NCTC 13042, CCUG 39484, JCM 11140, CIP 105551, DSM 18710

Special Collections

Other strains from Prevotella pallens

Section

Prevotella pallens DSM 18710 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human saliva, young child.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Prevotella*
	Species	**Prevotella pallens**
	Full Scientific Name (LPSN)	Prevotella pallens Könönen et al. 1998

Information on morphological and physiological properties Morphology

[Ref.: #121509]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %94.719

[Ref.: #121509]	Cell shape	rod-shaped

[Ref.: #121509]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7671]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #7671]

Culture medium growth

[Ref.: #7671]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7671]

Culture medium composition

expand / minimize

[Ref.: #34054]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #34054]

Culture medium growth

[Ref.: #34054]

Culture medium composition

expand / minimize

[Ref.: #121509]

Culture medium

CIP Medium 20

[Ref.: #121509]

Culture medium growth

[Ref.: #121509]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #7671]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #7671]

Culture medium growth

[Ref.: #7671]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7671]	growth	37 °C
[Ref.: #34054]	growth	37 °C
[Ref.: #54814]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #121509]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7671]	Oxygen tolerance	anaerobe
[Ref.: #54814]	Oxygen tolerance	anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %92.972
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	+	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	yes	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	+	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #7671]	13603	-	+	-	-	-	+	-	-	-	-	-	+	-	-	-	+	+	+	-	+	-	-	-	-	+	-	-	+	-
[Ref.: #7671]	14825	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7671]	Sample type/isolated from	human saliva, young child
[Ref.: #7671]	Geographic location (country and/or sea, region)	Helsinki
[Ref.: #7671]	Country	Finland
[Ref.: #7671]	Country ISO 3 Code	FIN
[Ref.: #7671]	Continent	Europe

[Ref.: #54814]	Sample type/isolated from	Human saliva,young child
[Ref.: #54814]	Geographic location (country and/or sea, region)	Helsinki ?
[Ref.: #54814]	Country	Finland
[Ref.: #54814]	Country ISO 3 Code	FIN
[Ref.: #54814]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human oral cavity

[Ref.: #121509]	Sample type/isolated from	Human, Saliva
[Ref.: #121509]	Country	Finland
[Ref.: #121509]	Country ISO 3 Code	FIN
[Ref.: #121509]	Continent	Europe
[Ref.: #121509]	Isolation date	1992
* marker position based on {}

Isolation sources categories

#Host	#Human	#Child
#Host Body Product	#Oral cavity and Airways	#Saliva

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y13105 (>99% sequence identity) for Prevotella pallens subclade from Microbeatlas

Aquatic Samples	1248
Soil Samples	1018
Animal Samples	63428
Plant Samples	489
Total Samples	66183

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7671]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121509]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prevotella pallens 16S rRNA gene, strain 10371	Y13105	1454	GenBank ENA	997353 tax ID
[Ref.: #67770]	Prevotella pallens gene for 16S ribosomal RNA, partial sequence, strain: JCM 11140	AB547703	1492	GenBank ENA	997353 tax ID
[Ref.: #7671]	Prevotella pallens strain 10371 16S ribosomal RNA, partial sequence	NR_026417	1454	GenBank ENA	60133 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prevotella pallens ATCC 700821	GCA_000220255	scaffold	GenBank ENA	997353 tax ID
[Ref.: #67770]	Prevotella pallens DSM 18710	GCA_003269195	scaffold	GenBank ENA	60133 tax ID
[Ref.: #66792]	Prevotella pallens ATCC 700821	997353.4	wgs	PATRIC	997353 tax ID	*
[Ref.: #66792]	Prevotella pallens strain DSM 18710	60133.3	wgs	PATRIC	60133 tax ID	*
[Ref.: #66792]	Prevotella pallens ATCC 700821	651324090	draft	JGI IMG/M	997353 tax ID	*
[Ref.: #66792]	Prevotella pallens DSM 18710	2695420923	draft	JGI IMG/M	60133 tax ID	*

[Ref.: #7671]

GC-content

37.4 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Prevotella pallens ATCC 700821 ATCC 700821 NCBI: GCA_000220255.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella pallens ATCC 700821 PATRIC: 997353.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	94.719	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	88.955	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	92.442	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.972	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.75	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	no

Availability in culture collections External links

[Ref.: #7671]

Culture collection no.

DSM 18710, ATCC 700821, CCUG 39484, CIP 105551, NCTC 13042, AHN 10371, JCM 11140

[Ref.: #81764]

SI-ID 44156

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prevotella aurantiaca sp. nov., isolated from the human oral cavity.	Sakamoto M, Suzuki N, Okamoto M	Int J Syst Evol Microbiol	10.1099/ijs.0.012831-0	2009	*
Phylogeny	Prevotella falsenii sp. nov., a Prevotella intermedia-like organism isolated from monkey dental plaque.	Sakamoto M, Kumada H, Hamada N, Takahashi Y, Okamoto M, Bakir MA, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.002626-0	2009	*
Phylogeny	Phylogenetic characterization and proposal of a new pigmented species to the genus Prevotella: Prevotella pallens sp. nov.	Kononen E, Eerola E, Frandsen EV, Jalava J, Matto J, Salmenlinna S, Jousimies-Somer H	Int J Syst Bacteriol	10.1099/00207713-48-1-47	1998	*

References

#7671

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18710

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#34054 ; Curators of the CIP;
#54814 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 39484

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81764

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44156.1 )

#121509 Collection of Institut Pasteur ; Curators of the CIP; CIP 105551
* These data were automatically processed and therefore are not curated

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Prevotella pallens ATCC 700821 ATCC 700821

Prevotella pallens ATCC 700821

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