Name: Thiomicrospira sp. MA2-6
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11918

Type strain:

Species: Thiomicrospira sp.

Strain Designation: MA2-6

Culture col. no.: DSM 13155

Strain history: <- J. Küver, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; MA2-6 <- T. Brinkhoff <- G. Muyzer <- H. W. Jannasch

NCBI tax ID(s): 935 (species)

SI-ID 49420

DSM 13155

Special Collections

DSMZ

Other strains from Thiomicrospira sp.

Section

Thiomicrospira sp. MA2-6 is a Gram-negative bacterium that was isolated from slurp sample of whitish material from the base of a beehive smoker.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Piscirickettsiaceae*
	Genus	*Thiomicrospira*
	Full Scientific Name (LPSN)	Thiomicrospira Kuenen and Veldkamp 1972 (Approved Lists 1980)

	Synonym	Thialkalimicrobium
	Synonym	Thioalkalimicrobium

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.333

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4928]

Culture medium

THIOMICROSPIRA PELOPHILA MEDIUM (DSMZ Medium 142)

[Ref.: #4928]

Culture medium growth

[Ref.: #4928]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4928]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4928]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %92.192

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4928]	Sample type/isolated from	slurp sample of whitish material from the base of a beehive smoker
[Ref.: #4928]	Geographic location (country and/or sea, region)	Mid-Atlantic Ridge, Snake Pit site
[Ref.: #4928]	Country	International waters
[Ref.: #4928]	Geographic location	23.3333°/-44.9500°
* marker position based on {}

Isolation sources categories

#Engineered

#Industrial

#Engineered product

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence L40811 (>99% sequence identity) for Hydrogenovibrio thermophilus from Microbeatlas

Aquatic Samples	508
Soil Samples	52
Animal Samples	70
Plant Samples	2
Total Samples	632

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4928]	Thiomicrospia sp. 16S ribosomal RNA (16S rRNA) gene, partial sequence	L40811	1480	GenBank ENA	935 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thiomicrospira sp. MA2-6	1449087.3	wgs	PATRIC	1449087 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thiomicrospira sp. MA2-6 PATRIC: 1449087.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.333	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	75.911	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.192	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	50.799	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.7	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	77.534	no

Availability in culture collections External links

[Ref.: #4928]

Culture collection no.

DSM 13155

[Ref.: #81132]

SI-ID 49420

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments.	Muyzer G, Teske A, Wirsen CO, Jannasch HW	Arch Microbiol	10.1007/BF02529967	1995	*

References

#4928

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13155

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#81132

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49420.1 )

* These data were automatically processed and therefore are not curated

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