Strain identifier
BacDive ID: 11918
Type strain: 
Species: Thiomicrospira sp.
Strain Designation: MA2-6
Strain history: <- J. Küver, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; MA2-6 <- T. Brinkhoff <- G. Muyzer <- H. W. Jannasch
NCBI tax ID(s): 935 (species)
version 9.1 (current version)
General
@ref: 4928
BacDive-ID: 11918
DSM-Number: 13155
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Thiomicrospira sp. MA2-6 is a Gram-negative bacterium that was isolated from slurp sample of whitish material from the base of a beehive smoker.
NCBI tax id
- NCBI tax id: 935
- Matching level: species
strain history
- @ref: 4928
- history: <- J. Küver, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; MA2-6 <- T. Brinkhoff <- G. Muyzer <- H. W. Jannasch
doi: 10.13145/bacdive11918.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Beggiatoales
- family: Piscirickettsiaceae
- genus: Thiomicrospira
- species: Thiomicrospira sp.
- full scientific name: Thiomicrospira Kuenen and Veldkamp 1972 (Approved Lists 1980)
synonyms
@ref synonym 20215 Thialkalimicrobium 20215 Thioalkalimicrobium
@ref: 4928
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Thiotrichales
family: Piscirickettsiaceae
genus: Thiomicrospira
species: Thiomicrospira sp.
full scientific name: Thiomicrospira sp.
strain designation: MA2-6
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.333
Culture and growth conditions
culture medium
- @ref: 4928
- name: THIOMICROSPIRA PELOPHILA MEDIUM (DSMZ Medium 142)
- growth: yes
- link: https://mediadive.dsmz.de/medium/142
- composition: Name: THIOMICROSPIRA PELOPHILA MEDIUM (DSMZ Medium 142) Composition: NaCl 24.8756 g/l Na2S2O3 x 5 H2O 4.97512 g/l MgSO4 x 7 H2O 1.49254 g/l (NH4)2SO4 0.995025 g/l K2HPO4 0.497512 g/l Na2-EDTA 0.00995025 g/l ZnSO4 x 7 H2O 0.00437811 g/l Bromothymol blue 0.0039801 g/l CaCl2 x 2 H2O 0.00110249 g/l MnCl2 x 4 H2O 0.00100697 g/l FeSO4 x 7 H2O 0.000995025 g/l CoCl2 x 6 H2O 0.000320398 g/l CuSO4 x 5 H2O 0.000312438 g/l Pyridoxine hydrochloride 0.000298507 g/l (NH4)6Mo7O24 x 4 H2O 0.000218905 g/l Nicotinic acid 0.000199005 g/l Thiamine-HCl x 2 H2O 0.000199005 g/l Vitamin B12 9.95025e-05 g/l Calcium pantothenate 9.95025e-05 g/l p-Aminobenzoic acid 7.9602e-05 g/l D-(+)-biotin 1.99005e-05 g/l Distilled water
culture temp
- @ref: 4928
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 92.192
Isolation, sampling and environmental information
isolation
- @ref: 4928
- sample type: slurp sample of whitish material from the base of a beehive smoker
- geographic location: Mid-Atlantic Ridge, Snake Pit site
- country: International waters
- latitude: 23.3333
- longitude: -44.95
isolation source categories
- Cat1: #Engineered
- Cat2: #Industrial
- Cat3: #Engineered product
taxonmaps
- @ref: 69479
- File name: preview.99_3370.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_118;96_1109;97_1299;98_2583;99_3370&stattab=map
- Last taxonomy: Hydrogenovibrio thermophilus
- 16S sequence: L40811
- Sequence Identity:
- Total samples: 632
- soil counts: 52
- aquatic counts: 508
- animal counts: 70
- plant counts: 2
Sequence information
16S sequences
- @ref: 4928
- description: Thiomicrospia sp. 16S ribosomal RNA (16S rRNA) gene, partial sequence
- accession: L40811
- length: 1480
- database: nuccore
- NCBI tax ID: 935
Genome sequences
- @ref: 66792
- description: Thiomicrospira sp. MA2-6
- accession: 1449087.3
- assembly level: wgs
- database: patric
- NCBI tax ID: 1449087
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99.333 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 75.911 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 92.192 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 50.799 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.7 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 77.534 | no |
External links
@ref: 4928
culture collection no.: DSM 13155
straininfo link
- @ref: 81132
- straininfo: 49420
literature
- topic: Phylogeny
- Pubmed-ID: 7545384
- title: Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments.
- authors: Muyzer G, Teske A, Wirsen CO, Jannasch HW
- journal: Arch Microbiol
- DOI: 10.1007/BF02529967
- year: 1995
- mesh: Base Sequence, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/*genetics, Electrophoresis, Polyacrylamide Gel, Genes, Bacterial, Gram-Negative Chemolithotrophic Bacteria/classification/*genetics/metabolism, Molecular Sequence Data, Oxidation-Reduction, *Phylogeny, Polymerase Chain Reaction, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/*genetics, *Seawater, Sulfur/metabolism, *Water Microbiology
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4928 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13155) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13155 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 81132 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49420.1 | StrainInfo: A central database for resolving microbial strain identifiers |