Name: Chelativorans multitrophicus DSM 9103
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11897

Type strain:

Species: Chelativorans multitrophicus

Culture col. no.: DSM 9103, VKM B-2394

Strain history: <- T. Egli, EAWAG, Swiss Fed. Inst. Aquatic Sci. & Technol., Dubendorf, Switzerland

NCBI tax ID(s): 449973 (species)

SI-ID 215465

DSM 9103, VKM B-2394

Special Collections

Other strains from Chelativorans multitrophicus

Section

Chelativorans multitrophicus DSM 9103 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from mixture of soil extracts and activated sludge from industrial wastewater treatment plants.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Chelativorans*
	Species	**Chelativorans multitrophicus**
	Full Scientific Name (LPSN)	Chelativorans multitrophicus Doronina et al. 2010

Synonym

Chelativorans oligotrophicus

Information on morphological and physiological properties Morphology

[Ref.: #28982]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.828

[Ref.: #28982]	Cell length	1.35 µm

[Ref.: #28982]	Cell width	0.75 µm

[Ref.: #28982]	Cell shape	rod-shaped

[Ref.: #28982]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3464]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #3464]

Culture medium growth

[Ref.: #3464]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3464]

Culture medium composition

expand / minimize

[Ref.: #3464]

Culture medium

PLATE COUNT AGAR (DSMZ Medium 464)

[Ref.: #3464]

Culture medium growth

[Ref.: #3464]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3464]

Culture medium composition

expand / minimize

[Ref.: #3464]

Culture medium

EDTA-MEDIUM (DSMZ Medium 463a)

[Ref.: #3464]

Culture medium growth

[Ref.: #3464]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3464]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #3464]	growth	28 °C
[Ref.: #28982]	growth	25-35 °C
[Ref.: #28982]	optimum	30 °C

	pH	Kind of pH		pH
[Ref.: #28982]			optimum	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #28982]

Oxygen tolerance

aerobe

[Ref.: #28982]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #28982]		NaCl		growth	<3	%

	Metabolite production	Metabolite	Production
[Ref.: #28982]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #28982]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #28982]		catalase	+	1.11.1.6
[Ref.: #28982]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3464]	Sample type/isolated from	mixture of soil extracts and activated sludge from industrial wastewater treatment plants
[Ref.: #3464]	Country	Switzerland
[Ref.: #3464]	Country ISO 3 Code	CHE
[Ref.: #3464]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Industrial wastewater
#Engineered	#Waste	#Water treatment plant
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF457243 (>99% sequence identity) for Mesorhizobium from Microbeatlas

Aquatic Samples	392
Soil Samples	603
Animal Samples	759
Plant Samples	156
Total Samples	1910

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3464]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3464]	Chelativorans multitrophicus strain DSM 9103 16S ribosomal RNA gene, partial sequence	EF457243	1415	GenBank ENA	449973 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chelativorans multitrophicus DSM 9103	GCA_011317445	contig	GenBank ENA	449973 tax ID	*
[Ref.: #66792]	Chelativorans multitrophicus strain DSM 9103	449973.3	wgs	PATRIC	449973 tax ID	*

[Ref.: #3464]	GC-content	63.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #28982]	GC-content	63.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chelativorans multitrophicus strain DSM 9103 PATRIC: 449973.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chelativorans multitrophicus strain DSM 9103 PATRIC: 449973.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.828	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.836	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.844	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.773	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.65	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	68.21	no

Availability in culture collections External links

[Ref.: #3464]

Culture collection no.

DSM 9103, VKM B-2394

[Ref.: #81114]

SI-ID 215465

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chelativorans alearense sp. nov., A Novel Bacterial Species Isolated From Soil in Alear, China.	Meng D, Liu YL, Gu PF, Fan XY, Huang ZS, Ji Y, Li WM, Du ZJ, Li Q	Curr Microbiol	10.1007/s00284-021-02428-6	2021	*
Phylogeny	Chelativorans xinjiangense sp. nov., a novel bacterial species isolated from soil in Xinjiang, China.	Meng D, Liu YL, Gu PF, Fan XY, Huang ZS, Ji Y, Li WM, Du ZJ, Li Q	Arch Microbiol	10.1007/s00203-020-02064-x	2020	*
Phylogeny	Chelativorans multitrophicus gen. nov., sp. nov. and Chelativorans oligotrophicus sp. nov., aerobic EDTA-degrading bacteria.	Doronina NV, Kaparullina EN, Trotsenko YA, Nortemann B, Bucheli-Witschel M, Weilenmann HU, Egli T	Int J Syst Evol Microbiol	10.1099/ijs.0.003152-0	2009	*

References

#3464

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9103

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28982

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25415 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81114

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID215465.1 )

#25415

IJSEM 1044 2010 ( DOI 10.1099/ijs.0.003152-0 , PubMed 19666787 )

* These data were automatically processed and therefore are not curated

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Chelativorans multitrophicus strain DSM 9103

Chelativorans multitrophicus strain DSM 9103

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