Aliihoeflea aestuarii (DSM 19536, JCM 15118, KCTC 22052)

Name: Aliihoeflea aestuarii (DSM 19536, JCM 15118, KCTC 22052)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11899

Type strain

Strain Designation N8

Culture col. no. DSM 19536 JCM 15118 KCTC 22052 N8

NCBI tax ID(s) 453840

Special Collections DSMZ JCM KCTC

History DSMZ <- S. W. Roh, Korea Res. Inst. Biosci. & Biotechnol. (KRIBB), Taejon, South Korea; N8 JCM <-- S. W. Roh N8.

Links

Aliihoeflea aestuarii N8 is a bacterium that was isolated from tidal flat sediment.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401484

KCTC 22052,JCM 15118,DSM 19536

@ref 20215

Last LPSN update 2026-05-29 08:27:40

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Bartonellaceae

Genus Aliihoeflea

Species Aliihoeflea aestuarii

Full scientific name Aliihoeflea aestuarii Roh et al. 2025

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.083

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8157	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8157	positive	growth	28
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.59

Spore formation

@ref	Spore formation	Confidence
125438		91.164
125439		96.473

Observation

67770

Observationquinones: Q-10

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Tidal flat
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Latitude	Longitude
8157	tidal flat sediment	Republic of Korea	KOR	Asia
67770	Tidal flat sediment in Yeosu (34° 47' 26" N 127° 34' 01" E)	Republic of Korea	KOR	Asia	34.7906	127.567 34.7906/127.567

Taxonmaps

69479

Global distribution of 16S sequence EF660756 (>99% sequence identity) for Aliihoeflea aestuarii subclade from Microbeatlas

Aquatic Samples	292
Soil Samples	401
Animal Samples	713
Plant Samples	146
Total Samples	1552

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2410566v1 assembly for Aliihoeflea aestuarii JCM 15118	contig	GCA_024105665	453840.4	8045855441	453840	73

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8157	Aliihoeflea aestuarii strain N8 16S ribosomal RNA gene, partial sequence	EF660756	1453		453840

GC content

@ref	GC-content (mol%)	Method
67770	53.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2410566v1 assembly for Aliihoeflea aestuarii JCM 15118
NCBI: GCA_024105665

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.59	no
125439	gram_stain	BacteriaNetⓘ	negative	86.31	no
125439	spore_formation	BacteriaNetⓘ	no	96.47	no
125439	motility	BacteriaNetⓘ	no	64.86	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aliihoeflea aestuarii JCM 15118
NCBI: GCA_024105665.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.08	no
125438	anaerobic	anaerobicⓘ	no	93.21	no
125438	aerobic	aerobicⓘ	yes	84.08	no
125438	spore-forming	spore-formingⓘ	no	91.16	no
125438	thermophilic	thermophileⓘ	no	94.79	no
125438	flagellated	motile2+ⓘ	yes	55.54	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Taxonomic and metabolic characterisation of biofilms colonising Roman stuccoes at Baia's thermal baths and restoration strategies.	De Luca D, Piredda R, Scamardella S, Martelli Castaldi M, Troisi J, Lombardi M, De Castro O, Cennamo P.	Sci Rep	10.1038/s41598-024-76637-x	2024
Phylogeny	Aliihoeflea aestuarii gen. nov., sp. nov., a novel bacterium isolated from tidal flat sediment.	Roh SW, Kim KH, Nam YD, Chang HW, Kim MS, Shin KS, Yoon JH, Oh HM, Bae JW	J Microbiol	10.1007/s12275-008-0196-x	2008

References

#8157	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19536
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

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Aliihoeflea aestuarii (DSM 19536, JCM 15118, KCTC 22052)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_024105665

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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