Name: Chelativorans multitrophicus LPM-4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133437

Type strain:

Species: Chelativorans multitrophicus

Strain Designation: LPM-4

Culture col. no.: VKM B-2395, DSM 19276

Strain history: <- Y. A. Trotsenko, Inst. Biochem. Physiol. Microorg., RAS, Pushchino, Russia <- T. I. Chistyakova

NCBI tax ID(s): 449974 (species)

SI-ID 403528

DSM 19276

Other strains from Chelativorans multitrophicus

C. multitrophicus DSM 9103, VKM B-2394 (type strain)
C. multitrophicus BNC1, DSM 6780
C. multitrophicus ANF 1, BNC7, DSM 11496
C. multitrophicus BNC5, DSM 11513, ANL 2
C. multitrophicus ALN1, BNC5, DSM 11514
C. multitrophicus BNC6, DSM 11515
C. multitrophicus ANF2, BNC8, DSM 11516
C. multitrophicus ANF11, BNC3, DSM 11851

Section

Chelativorans multitrophicus LPM-4 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Sludge.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Chelativorans*
	Species	**Chelativorans multitrophicus**
	Full Scientific Name (LPSN)	Chelativorans multitrophicus Doronina et al. 2010

Synonym

Chelativorans oligotrophicus

Information on morphological and physiological properties Morphology

[Ref.: #28982]	Gram stain	negative

[Ref.: #28982]	Cell length	1.35 µm

[Ref.: #28982]	Cell width	0.75 µm

[Ref.: #28982]	Cell shape	rod-shaped

[Ref.: #28982]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7993]

Culture medium

MEDIUM WITH EDTA AS CARBON SOURCE (DSMZ Medium 473)

[Ref.: #7993]

Culture medium growth

[Ref.: #7993]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #7993]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7993]

Culture medium growth

[Ref.: #7993]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7993]	growth	28 °C
[Ref.: #28982]	growth	25-35 °C
[Ref.: #28982]	optimum	30 °C

[Ref.: #7993]	Temperature range	mesophilic
[Ref.: #28982]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #28982]			optimum	7
[Ref.: #28982]			growth	6.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #28982]

Oxygen tolerance

aerobe

[Ref.: #28982]

Ability of spore formation

	Metabolite production	Metabolite	Production
[Ref.: #28982]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #28982]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #28982]		catalase	+	1.11.1.6
[Ref.: #28982]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #28982]	Sample type/isolated from	Sludge
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF457242 (>99% sequence identity) for Mesorhizobium from Microbeatlas

Aquatic Samples	392
Soil Samples	603
Animal Samples	759
Plant Samples	156
Total Samples	1910

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7993]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #28982]	Chelativorans oligotrophicus strain LPM-4 16S ribosomal RNA gene, partial sequence	EF457242	1396	GenBank	449974 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chelativorans oligotrophicus LPM-4	GCA_011317505	contig	GenBank	449974 tax ID	*

[Ref.: #28982]	GC-content	60.8 mol%
[Ref.: #7993]	GC-content	60.8 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chelativorans oligotrophicus LPM-4 NCBI: GCA_011317505.1
[Ref.: #69480]	motile	yes	67.184	yes
[Ref.: #69480]	flagellated	no	74.592	yes
[Ref.: #69480]	gram-positive	no	98.412	yes
[Ref.: #69480]	anaerobic	no	97.87	yes
[Ref.: #69480]	aerobic	yes	89.702	yes
[Ref.: #69480]	halophile	no	78.44	no
[Ref.: #69480]	spore-forming	no	95.162	yes
[Ref.: #69480]	thermophile	no	92.99	no
[Ref.: #69480]	glucose-util	yes	90.442	no
[Ref.: #69480]	glucose-ferment	no	89.993	no

Availability in culture collections External links

[Ref.: #28982]

Culture collection no.

VKM B-2395, DSM 19276

[Ref.: #91441]

SI-ID 403528

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chelativorans multitrophicus gen. nov., sp. nov. and Chelativorans oligotrophicus sp. nov., aerobic EDTA-degrading bacteria.	Doronina NV, Kaparullina EN, Trotsenko YA, Nortemann B, Bucheli-Witschel M, Weilenmann HU, Egli T	Int J Syst Evol Microbiol	10.1099/ijs.0.003152-0	2009	*
Metabolism	[Degradation of the EDTA and EDTA complexes with metals by immobilized cells of Chelativorans oligotrophicus LPM-4 bacteria].	Kuvichkina TN, Kaparullina EN, Doronina NV, Trotsenko IuA, Reshetilov AN	Prikl Biokhim Mikrobiol		2012	*
Metabolism	[EDTA degradation by cells of Chelativorans oligotrophicus immobilized on a biofilter].	Kaparullina EN, Doronina NV, Ezhov VA, Trotsenko IuA	Prikl Biokhim Mikrobiol		2012	*
Metabolism	[Metabolism characteristics of Chelativorans oligotrophicus by two-phase growth on the mixture of EDTA and glucose].	Kaparullina EN, Doronina NV, Trilisenko LV, Vagabov VM, Trotsenko IuA	Prikl Biokhim Mikrobiol		2009	*

References

#7993

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19276

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28982

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25415 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91441

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403528.1 )

#25415

IJSEM 1044 2010 ( DOI 10.1099/ijs.0.003152-0 , PubMed 19666787 )

* These data were automatically processed and therefore are not curated

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Chelativorans oligotrophicus LPM-4

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