Name: Desulfitobacterium hafniense TCP-A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11768

Type strain:

Species: Desulfitobacterium hafniense

Strain Designation: TCP-A

Culture col. no.: DSM 13557

Strain history: <- A. Breitenstein, Martin-Luther-Universität Halle-Wittenberg, Germany; TCP-A (Desulfitobacterium frappieri) <- A. Breitenstein {1997}

NCBI tax ID(s): 872024 (strain), 49338 (species)

SI-ID 49488

DSM 13557

Other strains from Desulfitobacterium hafniense

D. hafniense DCB-2, DSM 10664 (type strain)
D. hafniense PCE-S, DSM 14645
D. hafniense DSM 12420, ATCC 700357
D. hafniense DP7, DSM 13498
D. hafniense G2, DSM 16228

Section

Desulfitobacterium hafniense TCP-A is an anaerobe, mesophilic bacterium that was isolated from freshwater sediment.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Desulfitobacteriaceae*
	Genus	*Desulfitobacterium*
	Species	**Desulfitobacterium hafniense**
	Full Scientific Name (LPSN)	Desulfitobacterium hafniense Christiansen and Ahring 1996

Synonym

Desulfitobacterium frappieri

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5085]

Culture medium

DESULFITOBACTERIUM FRAPPIERI MEDIUM (DSMZ Medium 836)

[Ref.: #5085]

Culture medium growth

[Ref.: #5085]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5085]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5085]			growth	30 °C

[Ref.: #5085]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5085]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5085]	Sample type/isolated from	freshwater sediment
[Ref.: #5085]	Geographic location (country and/or sea, region)	River Saale
[Ref.: #5085]	Country	Germany
[Ref.: #5085]	Country ISO 3 Code	DEU
[Ref.: #5085]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Freshwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ404686 (>99% sequence identity) for Desulfitobacterium hafniense subclade from Microbeatlas

Aquatic Samples	46
Soil Samples	129
Animal Samples	39
Plant Samples	11
Total Samples	225

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5085]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5085]	Desulfitobacterium frappieri 16S rRNA gene, strain TCP-A	AJ404686	1584	ENA	872024 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfitobacterium hafniense TCP-A	GCA_000378805	scaffold	GenBank	872024 tax ID	*
[Ref.: #66792]	Desulfitobacterium hafniense TCP-A	872024.4	wgs	PATRIC	872024 tax ID	*
[Ref.: #66792]	Desulfitobacterium hafniense TCP-A	2516653041	draft	JGI IMG/M	872024 tax ID	*

[Ref.: #5085]

GC-content

45.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfitobacterium hafniense TCP-A TCP-A NCBI: GCA_000378805.1
[Ref.: #69480]	motile	yes	87.054	no
[Ref.: #69480]	flagellated	no	68.79	no
[Ref.: #69480]	gram-positive	no	80.895	no
[Ref.: #69480]	anaerobic	yes	98.283	no
[Ref.: #69480]	aerobic	no	95.761	yes
[Ref.: #69480]	halophile	no	96.263	no
[Ref.: #69480]	spore-forming	yes	95.571	no
[Ref.: #69480]	thermophile	no	99.21	yes
[Ref.: #69480]	glucose-util	yes	53.181	no
[Ref.: #69480]	glucose-ferment	no	79.373	no

Availability in culture collections External links

[Ref.: #5085]

Culture collection no.

DSM 13557

[Ref.: #80986]

SI-ID 49488

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Analysis of a 2,4,6-trichlorophenol-dehalogenating enrichment culture and isolation of the dehalogenating member Desulfitobacterium frappieri strain TCP-A.	Breitenstein A, Saano A, Salkinoja-Salonen M, Andreesen JR, Lechner U	Arch Microbiol	10.1007/s002030000248	2001	*
Phylogeny	Heterogeneity between 16S ribosomal RNA gene copies borne by one Desulfitobacterium strain is caused by different 100-200 bp insertions in the 5' region.	Villemur R, Constant P, Gauthier A, Shareck M, Beaudet R	Can J Microbiol	10.1139/w06-111	2007	*
Cultivation	Occurrence and expression of crdA and cprA5 encoding chloroaromatic reductive dehalogenases in Desulfitobacterium strains.	Gauthier A, Beaudet R, Lepine F, Juteau P, Villemur R	Can J Microbiol	10.1139/w05-111	2006	*

References

#5085

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13557

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80986

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49488.1 )

* These data were automatically processed and therefore are not curated

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Desulfitobacterium hafniense TCP-A TCP-A

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