Desulfitobacterium hafniense DCB-2 | Type strain | DSM 10664

Strain identifier

BacDive ID: 11765

Type strain:

Species: Desulfitobacterium hafniense

Strain Designation: DCB-2

Culture col. no.: DSM 10664

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #4028]	Domain	Bacteria
[Ref.: #4028]	Phylum	Firmicutes
[Ref.: #4028]	Class	Clostridia
[Ref.: #4028]	Order	Clostridiales
[Ref.: #4028]	Family	Desulfitobacteriaceae
[Ref.: #4028]	Genus	Desulfitobacterium
[Ref.: #4028]	Species	Desulfitobacterium hafniense
[Ref.: #4028]	Full Scientific Name	Desulfitobacterium hafniense Christiansen and Ahring 1996 emend. Niggemyer et al. 2001
[Ref.: #4028]	Strain Designation	DCB-2
[Ref.: #4028]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	26-03-2019 (DD-MM-YYYY)
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Firmicutes
[Ref.: #20215]	Class	Clostridia		Int. J. Syst. Evol. Microbiol. 60:469
[Ref.: #20215]	Family	Peptococcaceae		Int. J. Syst. Bacteriol. 30:237
[Ref.: #20215]	Genus	Desulfitobacterium	gen. nov. (VP)	Int. J. Syst. Bacteriol. 44:612*
[Ref.: #20215]	Species	Desulfitobacterium hafniense	sp. nov. (VP)	Int. J. Syst. Bacteriol. 46:442*
[Ref.: #20215]	Full Scientific Name	Desulfitobacterium hafniense Christiansen and Ahring 1996 emend. Niggemyer et al. 2001

[Ref.: #20215]

Synonym

Desulfitobacterium frappieri

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #43367]	Gram stain	negative
[Ref.: #43367]	Cell length	3.3-6 µm
[Ref.: #43367]	Cell width	0.6-0.7 µm
[Ref.: #43367]	Cell shape	rod-shaped
[Ref.: #43367]	Motility	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43367]		catalase	-	1.11.1.6

	Metabolite production	Metabolite	Production
[Ref.: #43367]		Indole	yes

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43367]	(+)-L-Glutamine	-	growth
[Ref.: #43367]	Acetic acid	-	growth
[Ref.: #43367]	Benzoate	-	growth
[Ref.: #43367]	Butyrate	-	growth
[Ref.: #43367]	Cellobiose	-	growth
[Ref.: #43367]	D-Fructose	-	growth
[Ref.: #43367]	D-Galactose	-	growth
[Ref.: #43367]	D-Glucose	-	growth
[Ref.: #43367]	D-Mannitol	-	growth
[Ref.: #43367]	D-Ribose	-	growth
[Ref.: #43367]	DL-Lactate	-	growth
[Ref.: #43367]	Esculin	-	growth
[Ref.: #43367]	Ferric iron	+	reduction
[Ref.: #43367]	Formic acid	-	growth
[Ref.: #43367]	Fucose	-	growth
[Ref.: #43367]	Fumaric acid	-	growth
[Ref.: #43367]	Gelatin	-	hydrolysis
[Ref.: #43367]	Glycerol	-	growth
[Ref.: #43367]	Inulin	-	growth
[Ref.: #43367]	L-Arabinose	-	growth
[Ref.: #43367]	L-Histidine	-	growth
[Ref.: #43367]	L-Phenylalanine	-	growth
[Ref.: #43367]	L-Rhamnose	-	growth
[Ref.: #43367]	L-Threonine	-	growth
[Ref.: #43367]	Lactose	-	growth
[Ref.: #43367]	Maltose	-	growth
[Ref.: #43367]	Mannose	-	growth
[Ref.: #43367]	Nitrate	+	reduction
[Ref.: #43367]	Propionic acid	-	growth
[Ref.: #43367]	Pyruvic acid	+	growth
[Ref.: #43367]	Raffinose	-	growth
[Ref.: #43367]	Salicin	-	growth
[Ref.: #43367]	Sorbitol	-	growth
[Ref.: #43367]	Starch	-	growth
[Ref.: #43367]	Sucrose	-	growth
[Ref.: #43367]	Sulfate	-	reduction
[Ref.: #43367]	Sulfite	+	reduction
[Ref.: #43367]	Thiosulfate	+	reduction
[Ref.: #43367]	Trehalose	-	growth
[Ref.: #43367]	Tryptophan	+	growth
[Ref.: #43367]	Xylose	-	growth
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #4028]	Oxygen tolerance	anaerobe
[Ref.: #43367]	Oxygen tolerance	obligate anaerobe

[Ref.: #43367]	Spore description	terminal
[Ref.: #43367]	Type of spore	spore
[Ref.: #43367]	Ability of spore formation	yes

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #4028]

Culture medium

DESULFITOBACTERIUM HAFNIENSE MEDIUM (DSMZ Medium 720), 37°C, anaerobic

[Ref.: #4028]

Culture medium growth

[Ref.: #4028]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #43367]

Culture medium

BA Medium

[Ref.: #43367]

Culture medium growth

[Ref.: #43367]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4028]			growth	37 ̊C
[Ref.: #43367]			optimum	37 ̊C

[Ref.: #4028]	Temperature range	mesophilic
[Ref.: #43367]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43367]			optimum	7

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #4028]

Sample type/isolated from

sewage sludge

[Ref.: #4028]

Country

Denmark

[Ref.: #4028]

Continent

Europe

[Ref.: #43367]

Sample type/isolated from

municipal sludge

Isolation sources categories

#Engineered	#Waste	#Sewage sludge
#Environmental	#Aquatic	#Mud (Sludge)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #4028]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #4028]	GC-content	47 mol%	high performance liquid chromatography (HPLC)
[Ref.: #43367]	GC-content	47 mol%	high performance liquid chromatography (HPLC)

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Desulfitobacterium hafniense partial cprA-like gene for putative CprA, clone 1	AJ290228	425	272564	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Desulfitobacterium hafniense partial cprA-like gene for putative CprA, clone 2	AJ290229	425	272564	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Desulfitobacterium hafniense partial cprA-like gene for putative CprA, clone 3	AJ290230	425	272564	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Desulfitobacterium hafniense clone DHacs acetyl-CoA synthase gene, partial cds	GU947735	376	49338	*
[Ref.: #4028]	EMBL Direct submission	D.hafniense 16S ribosomal RNA	X94975	1530	272564
[Ref.: #4028]	GenBank Genome project data	Desulfitobacterium hafniense DCB-2, complete genome	CP001336	5279134	272564

Availability in culture collectionsStrain availability

[Ref.: #4028]

Culture collection no.

DSM 10664

[Ref.: #4028]

Strain history

<- B. K. Ahring, Technical University of Denmark, Department of Environmental Science and Engineering, Lyngby, Denmark; DCB-2 <- D. Licht and T. Madsen {1992}

[Ref.: #20218]

Associated Passport(s) in StrainInfo

162104

References

#4028

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10664

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#43367

Nina Christiansen, Birgitte Kiaer Ahring: Desulfitobacterium hafniense sp. nov., an Anaerobic, Reductively Dechlorinating Bacterium. IJSB 45: 442 - 448 1996 ( DOI 10.1099/00207713-46-2-442 )

* These References are textmined

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