Strain identifier

BacDive ID: 11765

Type strain: Yes

Species: Desulfitobacterium hafniense

Strain Designation: DCB-2

Culture col. no.: DSM 10664

Strain history: <- B. K. Ahring, Technical University of Denmark, Department of Environmental Science and Engineering, Lyngby, Denmark; DCB-2 <- D. Licht and T. Madsen {1992}

NCBI tax ID(s): 272564 (strain), 49338 (species)

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Desulfitobacterium hafniense DCB-2 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from sewage sludge.

  1. Gram-negative
  2. motile
  3. rod-shaped
  4. spore-forming
  5. anaerobe
  6. mesophilic
  7. 16S sequence
  8. Bacteria
  9. genome sequence
  • Information on culture and growth conditions Culture and growth conditionsarrow_down
    • [Ref.: #4028] Culture medium
    DESULFITOBACTERIUM HAFNIENSE MEDIUM (DSMZ Medium 720)
    [Ref.: #4028] Culture medium growth Yes
    [Ref.: #4028] Culture medium link Medium recipe at MediaDive MediaDive
    [Ref.: #4028] Culture medium composition expand / minimize
     
    [Ref.: #43367] Culture medium
    BA Medium
    [Ref.: #43367] Culture medium growth Yes
    [Ref.: #43367] Culture medium composition expand / minimize
    Temperatures Kind of temperaturearrow to sort Temperaturearrow to sort
    [Ref.: #4028] growth 37  °C
    [Ref.: #43367] optimum 37  °C
     
    [Ref.: #4028] Temperature range mesophilic
    [Ref.: #43367] Temperature range mesophilic
    pH Kind of pHarrow to sort pHarrow to sort
    [Ref.: #43367] optimum 7
  • Availability in culture collections External linksarrow_down
    • [Ref.: #4028] Culture collection no. DSM 10664
    [Ref.: #20218] Associated Passport(s) in StrainInfo 162104
    Literature: Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries.
    Titlearrow to sort Authorsarrow to sort Journalarrow to sort DOIarrow to sort Yeararrow to sort Mesharrow to sort Topicarrow to sort Topic2arrow to sort
    Isolation and characterization of a novel As(V)-reducing bacterium: implications for arsenic mobilization and the genus Desulfitobacterium. Niggemyer A, Spring S, Stackebrandt E, Rosenzweig RF Appl Environ Microbiol 10.1128/AEM.67.12.5568-5580.2001 2001 Arsenates/*metabolism, Arsenic/metabolism, Culture Media, DNA, Ribosomal/analysis, Formates/metabolism, Fresh Water/*microbiology, Gram-Positive Rods/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Pollution, Chemical Phylogeny Metabolism *
    Evaluation of non-cyanobacterial genome sequences for occurrence of genes encoding proteins homologous to cyanophycin synthetase and cloning of an active cyanophycin synthetase from Acinetobacter sp. strain DSM 587. Krehenbrink M, Oppermann-Sanio FB, Steinbuchel A Arch Microbiol 10.1007/s00203-001-0396-9 2002 Acinetobacter/chemistry/classification/*enzymology/*genetics, Amino Acid Sequence, *Bacterial Proteins, Cloning, Molecular, Databases, Genetic, Escherichia coli/enzymology/genetics, Gene Expression, Genes, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data, Open Reading Frames/genetics, Peptide Synthases/chemistry/*genetics, Phylogeny, Plant Proteins/isolation & purification/metabolism, Sequence Homology, Amino Acid Genetics Enzymology *
    Occurrence and expression of crdA and cprA5 encoding chloroaromatic reductive dehalogenases in Desulfitobacterium strains. Gauthier A, Beaudet R, Lepine F, Juteau P, Villemur R Can J Microbiol 10.1139/w05-111 2006 Bacterial Proteins, Chlorophenols, Culture Media, DNA-Binding Proteins, Desulfitobacterium/enzymology/*genetics, Gene Expression Regulation, Bacterial, *Genes, Bacterial, Hydrolases/*genetics/metabolism, Repressor Proteins, Species Specificity Cultivation Phylogeny *
    The Desulfitobacterium genus. Villemur R, Lanthier M, Beaudet R, Lepine F FEMS Microbiol Rev 10.1111/j.1574-6976.2006.00029.x 2006 Biodegradation, Environmental, Chlorine/metabolism, Desulfitobacterium/classification/*genetics/*metabolism, Genes, Bacterial, Genes, rRNA, Humic Substances, Hydrogen/metabolism, Metals/metabolism, Oxidation-Reduction, Phylogeny, Sulfites/metabolism Metabolism Phylogeny *
    Heterogeneity between 16S ribosomal RNA gene copies borne by one Desulfitobacterium strain is caused by different 100-200 bp insertions in the 5' region. Villemur R, Constant P, Gauthier A, Shareck M, Beaudet R Can J Microbiol 10.1139/w06-111 2007 DNA Transposable Elements/*genetics, Desulfitobacterium/classification/*genetics, In Situ Hybridization, Fluorescence, Molecular Sequence Data, Polymerase Chain Reaction, RNA, Ribosomal, 16S/*chemistry/classification/genetics, *Sequence Analysis, RNA Phylogeny Genetics *
    Divergent roles of CprK paralogues from Desulfitobacterium hafniense in activating gene expression. Gabor K, Hailesellasse Sene K, Smidt H, de Vos WM, van der Oost J Microbiology (Reading) 10.1099/mic.0.2008/021584-0 2008 Amino Acid Sequence, Bacterial Proteins/chemistry/*genetics/metabolism, Base Sequence, Cyclic AMP Receptor Protein/chemistry/*genetics/metabolism, Desulfitobacterium/genetics/*metabolism/physiology, Escherichia coli/genetics/metabolism, *Gene Expression Regulation, Bacterial, Iron-Sulfur Proteins/chemistry/*genetics/metabolism, Membrane Proteins/genetics/metabolism, Methyl-Accepting Chemotaxis Proteins, Molecular Sequence Data, Transcription Factors/chemistry/*genetics/metabolism Metabolism Genetics *
    Identification and characterization of a novel CprA reductive dehalogenase specific to highly chlorinated phenols from Desulfitobacterium hafniense strain PCP-1. Bisaillon A, Beaudet R, Lepine F, Deziel E, Villemur R Appl Environ Microbiol 10.1128/AEM.01362-10 2010 Amino Acid Sequence, Cell Membrane/enzymology, Chlorophenols/*metabolism, Desulfitobacterium/*enzymology, Electrophoresis, Polyacrylamide Gel, Enzyme Stability, Hydrogen-Ion Concentration, Hydrolases/chemistry/*isolation & purification/*metabolism, Kinetics, Mass Spectrometry, Membrane Proteins/chemistry/isolation & purification/metabolism, Molecular Sequence Data, Molecular Weight, Substrate Specificity, Temperature Enzymology Metabolism *
    Structure of the first representative of Pfam family PF04016 (DUF364) reveals enolase and Rossmann-like folds that combine to form a unique active site with a possible role in heavy-metal chelation. Miller MD, Aravind L, Bakolitsa C, Rife CL, Carlton D, Abdubek P, Astakhova T, Axelrod HL, Chiu HJ, Clayton T, Deller MC, Duan L, Feuerhelm J, Grant JC, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, McMullan D, Morse AT, Nigoghossian E, Okach L, Reyes R, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA Acta Crystallogr Sect F Struct Biol Cryst Commun 10.1107/S1744309110007517 2010 Amino Acid Sequence, Bacterial Proteins/*chemistry/metabolism, Catalytic Domain, Crystallography, X-Ray, Desulfitobacterium/*chemistry/metabolism, Metals, Heavy/*chemistry/metabolism, Models, Molecular, Molecular Sequence Data, Phosphopyruvate Hydratase/*chemistry, Protein Binding, *Protein Folding, Protein Structure, Tertiary Metabolism Genetics *
    Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved alpha+beta core domain and an auxiliary C-terminal treble-clef zinc finger. Axelrod HL, Das D, Abdubek P, Astakhova T, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Clayton T, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Lam WW, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA Acta Crystallogr Sect F Struct Biol Cryst Commun 10.1107/S1744309110020166 2010 Aldehyde Oxidoreductases/*chemistry, Amino Acid Sequence, Crystallography, X-Ray, Desulfitobacterium/*enzymology, Methane/*biosynthesis, Models, Molecular, Molecular Sequence Data, Protein Structure, Secondary, Protein Structure, Tertiary, Structural Homology, Protein, *Zinc Fingers Enzymology Genetics *
    Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction. Kim SH, Harzman C, Davis JK, Hutcheson R, Broderick JB, Marsh TL, Tiedje JM BMC Microbiol 10.1186/1471-2180-12-21 2012 Carbon Dioxide/metabolism, DNA, Bacterial/*chemistry/*genetics, Desulfitobacterium/*genetics/metabolism, Genes, Bacterial, *Genome, Bacterial, Halogens/metabolism, Metabolic Networks and Pathways/genetics, Metals/metabolism, Molecular Sequence Data, Nitrogen Fixation, Organic Chemicals/metabolism, Oxidation-Reduction, Sequence Analysis, DNA Genetics Metabolism *

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