Name: Desulfitobacterium hafniense PCE-S
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11764

Type strain:

Species: Desulfitobacterium hafniense

Strain Designation: PCE-S

Culture col. no.: DSM 14645

Strain history: <- H. Scholz-Muramatsu, Univ. Stuttgart, Institut für Siedlungswasserbau, Stuttgart, Germany; PCE-S <- S. Granzow {1995}

NCBI tax ID(s): 49338 (species)

SI-ID 403899

DSM 14645

Other strains from Desulfitobacterium hafniense

D. hafniense DCB-2, DSM 10664 (type strain)
D. hafniense DSM 12420, ATCC 700357
D. hafniense DP7, DSM 13498
D. hafniense TCP-A, DSM 13557
D. hafniense G2, DSM 16228

Section

Desulfitobacterium hafniense PCE-S is an anaerobe, mesophilic bacterium that was isolated from soil from landfill site Eppelheim.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Desulfitobacteriaceae*
	Genus	*Desulfitobacterium*
	Species	**Desulfitobacterium hafniense**
	Full Scientific Name (LPSN)	Desulfitobacterium hafniense Christiansen and Ahring 1996

Synonym

Desulfitobacterium frappieri

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5430]

Culture medium

DESULFITOBACTERIUM (PCE II) MEDIUM (DSMZ Medium 1062)

[Ref.: #5430]

Culture medium growth

[Ref.: #5430]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5430]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5430]			growth	30 °C

[Ref.: #5430]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5430]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5430]	Sample type/isolated from	soil from landfill site Eppelheim
[Ref.: #5430]	Geographic location (country and/or sea, region)	Baden-Württemberg, near Heidelberg
[Ref.: #5430]	Country	Germany
[Ref.: #5430]	Country ISO 3 Code	DEU
[Ref.: #5430]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Landfill
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ512772 (>99% sequence identity) for Desulfitobacterium hafniense subclade from Microbeatlas

Aquatic Samples	46
Soil Samples	129
Animal Samples	39
Plant Samples	11
Total Samples	225

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5430]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5430]	Desulfitobacterium sp. PCE-S partial 16S rRNA gene, strain PCE-S	AJ512772	1451	ENA	211883 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfitobacterium hafniense PCE-S	GCA_000944695	contig	GenBank	49338 tax ID	*

[Ref.: #5430]

GC-content

47.3 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfitobacterium hafniense PCE-S NCBI: GCA_000944695.1
[Ref.: #69480]	motile	yes	88.088	no
[Ref.: #69480]	flagellated	no	65.861	no
[Ref.: #69480]	gram-positive	no	86.318	no
[Ref.: #69480]	anaerobic	yes	97.458	no
[Ref.: #69480]	aerobic	no	95.683	yes
[Ref.: #69480]	halophile	no	93.999	no
[Ref.: #69480]	spore-forming	yes	94.843	no
[Ref.: #69480]	glucose-util	yes	59.283	no
[Ref.: #69480]	thermophile	no	99.702	yes
[Ref.: #69480]	glucose-ferment	no	77.963	no

Availability in culture collections External links

[Ref.: #5430]

Culture collection no.

DSM 14645

[Ref.: #80982]

SI-ID 403899

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Variable dual carbon-bromine stable isotope fractionation during enzyme-catalyzed reductive dehalogenation of brominated ethenes.	Woods A, Kuntze K, Gelman F, Halicz L, Nijenhuis I	Chemosphere	10.1016/j.chemosphere.2017.09.128	2017	*
Genetics	Draft genome sequence and characterization of Desulfitobacterium hafniense PCE-S.	Goris T, Hornung B, Kruse T, Reinhold A, Westermann M, Schaap PJ, Smidt H, Diekert G	Stand Genomic Sci	10.1186/1944-3277-10-15	2015	*
Metabolism	Substrate hydrophobicity and cell composition influence the extent of rate limitation and masking of isotope fractionation during microbial reductive dehalogenation of chlorinated ethenes.	Renpenning J, Rapp I, Nijenhuis I	Environ Sci Technol	10.1021/es506108j	2015	*
Metabolism	Reductive dehalogenation of brominated ethenes by Sulfurospirillum multivorans and Desulfitobacterium hafniense PCE-S.	Ye L, Schilhabel A, Bartram S, Boland W, Diekert G	Environ Microbiol	10.1111/j.1462-2920.2009.02093.x	2009	*
Metabolism	Enzymes involved in the anoxic utilization of phenyl methyl ethers by Desulfitobacterium hafniense DCB2 and Desulfitobacterium hafniense PCE-S.	Kreher S, Schilhabel A, Diekert G	Arch Microbiol	10.1007/s00203-008-0400-8	2008	*
Enzymology	Isolation and characterization of Tn-Dha1, a transposon containing the tetrachloroethene reductive dehalogenase of Desulfitobacterium hafniense strain TCE1.	Maillard J, Regeard C, Holliger C	Environ Microbiol	10.1111/j.1462-2920.2004.00671.x	2005	*
Metabolism	Phenyl methyl ethers: novel electron donors for respiratory growth of Desulfitobacterium hafniense and Desulfitobacterium sp. strain PCE-S.	Neumann A, Engelmann T, Schmitz R, Greiser Y, Orthaus A, Diekert G	Arch Microbiol	10.1007/s00203-004-0651-y	2004	*
Enzymology	Characterization of the corrinoid iron-sulfur protein tetrachloroethene reductive dehalogenase of Dehalobacter restrictus.	Maillard J, Schumacher W, Vazquez F, Regeard C, Hagen WR, Holliger C	Appl Environ Microbiol	10.1128/AEM.69.8.4628-4638.2003	2003	*

References

#5430

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14645

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80982

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403899.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Desulfitobacterium hafniense in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF