Name: Desulfitobacterium hafniense DP7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11767

Type strain:

Species: Desulfitobacterium hafniense

Strain Designation: DP7

Culture col. no.: DSM 13498

Strain history: <- H. J. M. Harmsen, Wageningen University, Laboratory of Microbiology, Netherlands; DP7 (Desulfitobacterium frappieri) <- H. J. M. Harmsen {1999}

NCBI tax ID(s): 537010 (strain), 49338 (species)

SI-ID 49479

DSM 13498

Other strains from Desulfitobacterium hafniense

D. hafniense DCB-2, DSM 10664 (type strain)
D. hafniense PCE-S, DSM 14645
D. hafniense DSM 12420, ATCC 700357
D. hafniense TCP-A, DSM 13557
D. hafniense G2, DSM 16228

Section

Desulfitobacterium hafniense DP7 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from human feces of 28 year old female.

motile
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Desulfitobacteriaceae*
	Genus	*Desulfitobacterium*
	Species	**Desulfitobacterium hafniense**
	Full Scientific Name (LPSN)	Desulfitobacterium hafniense Christiansen and Ahring 1996

Synonym

Desulfitobacterium frappieri

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %94.148

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5068]

Culture medium

DESULFITOBACTERIUM FRAPPIERI MEDIUM (DSMZ Medium 836)

[Ref.: #5068]

Culture medium growth

[Ref.: #5068]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5068]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5068]			growth	37 °C

[Ref.: #5068]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5068]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.648

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5068]	Sample type/isolated from	human feces of 28 year old female
[Ref.: #5068]	Country	Netherlands
[Ref.: #5068]	Country ISO 3 Code	NLD
[Ref.: #5068]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	#Female
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ276701 (>99% sequence identity) for Desulfitobacterium hafniense subclade from Microbeatlas

Aquatic Samples	46
Soil Samples	129
Animal Samples	39
Plant Samples	11
Total Samples	225

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5068]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5068]	Desulfitobacterium frappieri 16S rRNA gene, strain DP7	AJ276701	1644	ENA	537010 tax ID
[Ref.: #20218]	Desulfitobacterium hafniense strain DSM 13498 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	DQ834671	527	ENA	537010 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfitobacterium hafniense DP7	GCA_000238035	scaffold	GenBank	537010 tax ID	*
[Ref.: #66792]	Desulfitobacterium hafniense DP7	537010.4	wgs	PATRIC	537010 tax ID	*
[Ref.: #66792]	Desulfitobacterium hafniense DP7	2522572064	draft	JGI IMG/M	537010 tax ID	*

[Ref.: #5068]

GC-content

48.3 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfitobacterium hafniense DP7 PATRIC: 537010.4
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfitobacterium hafniense DP7 DP7 NCBI: GCA_000238035.1
[Ref.: #69480]	motile	yes	86.253	no
[Ref.: #69480]	flagellated	no	70.416	no
[Ref.: #69480]	gram-positive	no	86.794	no
[Ref.: #69480]	anaerobic	yes	97.727	yes
[Ref.: #69480]	aerobic	no	95.503	yes
[Ref.: #69480]	halophile	no	95.239	no
[Ref.: #69480]	spore-forming	yes	94.763	no
[Ref.: #69480]	thermophile	no	99.432	no
[Ref.: #69480]	glucose-util	yes	58.979	no
[Ref.: #69480]	glucose-ferment	no	79.853	no

Availability in culture collections External links

[Ref.: #5068]

Culture collection no.

DSM 13498

[Ref.: #80985]

SI-ID 49479

References

#5068

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13498

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80985

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49479.1 )

* These data were automatically processed and therefore are not curated

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Desulfitobacterium hafniense DP7

Desulfitobacterium hafniense DP7 DP7

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