Muribacter muris (DSM 22206, ATCC 49577, CCUG 16938)

Name: Muribacter muris (DSM 22206, ATCC 49577, CCUG 16938)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11680

Type strain

Strain Designation 80-443D, Ackerman80-443D

Culture col. no. DSM 22206 ATCC 49577 CCUG 16938 CIP 103439 NCTC 12432 3 more

NCBI tax ID(s) 67855

Special Collections DSMZ CCUG CIP

History DSMZ <- CCUG; CCUG 28285 B <- R. Gherna, ATCC <- CCUG <- M. Bisgaard <- J.J. Ackermann CIP <- 1990, CCUG <- M. Bisgaard, Copenhagen, Denmark, Actinobacillus-like, Taxon 12 <- W. Mannheim

Links

Muribacter muris 80-443D is a microaerophile bacterium that was isolated from mouse.

microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 265699

ATCC 49577,CCUG 16938,CCUG 23134,NCTC 12432,CIP 103439,CCUG 28285 B,CCUG 28285,DSM 22206

@ref 20215

Last LPSN update 2026-05-29 08:27:37

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Muribacter

Species Muribacter muris

Full scientific name Muribacter muris (Bisgaard 1988) Nicklas et al. 2015

Synonyms (1)

Actinobacillus muris

BacDive ID	Other strains from **Muribacter muris** (22)	Type strain
143072	M. muris CCUG 16939
143073	M. muris CCUG 16940
144138	M. muris CCUG 23135
145335	M. muris CCUG 28211 B
147189	M. muris CCUG 33023
149486	M. muris CCUG 37826
150868	M. muris CCUG 42591
151097	M. muris CCUG 43271
151136	M. muris CCUG 43345
151137	M. muris CCUG 43346
151267	M. muris CCUG 43590
151672	M. muris CCUG 44579
151677	M. muris CCUG 44609
152299	M. muris CCUG 46374
152381	M. muris CCUG 46584
152397	M. muris CCUG 46670
152398	M. muris CCUG 46671
152501	M. muris CCUG 46947
152524	M. muris CCUG 47001
152624	M. muris CCUG 47219
153508	M. muris CCUG 49973
153509	M. muris CCUG 49984

Morphology

Colony morphology

@ref	Type of hemolysis	Hemolysis ability
16202	gamma	0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16202	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
34034	MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola		Distilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
121198	CIP Medium 118-b	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
16202	positive	growth	37
34034	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
16202	microaerophile
125439	obligate aerobe	95.751

Spore formation

@ref	Spore formation	Confidence
125439		99.05

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68377	15824 ChEBI	D-fructose	+	builds acid from	from API NH
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68377	17306 ChEBI	maltose	+	builds acid from	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68377	16199 ChEBI	urea	+	hydrolysis	from API NH

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH

Enzymes

@ref	Value	Activity	Ec
68377	alkaline phosphatase	+	3.1.3.1	from API NH
16202	catalase	+	1.11.1.6
16202	cytochrome-c oxidase	+	1.9.3.1
68377	lipase	+		from API NH
68377	tryptophan deaminase	-	4.1.99.1	from API NH
68377	urease	+	3.5.1.5	from API NH

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
16202	+	+	+	+	-	+	+	+	+	-	+	-	-
16202	-	+	+	+	+	-	+	+	+	+	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Muridae (Mouse/Rat)

Isolation

@ref	Sample type
16202	mouse
121198	Animal, Mouse, pharynx

Taxonmaps

69479

Global distribution of 16S sequence AY362894 (>99% sequence identity) for Muribacter muris subclade from Microbeatlas

Aquatic Samples	23
Soil Samples	14
Animal Samples	1592
Plant Samples	16
Total Samples	1645

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16202	1	Risk group (German classification) According to TRBA 466
121198	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM103820v1 assembly for Muribacter muris Ackerman80-443D	contig	GCA_001038205	67855.4	2639762803	67855	52.62

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Actinobacillus muris partial 16S rRNA gene, strain P1573	AJ438684	429	67855
20218	Muribacter muris strain NCTC 12432 16S ribosomal RNA gene, partial sequence	AY362894	1356	67855
16202	Actinobacillus muris 16S ribosomal RNA gene, complete sequence	AF024526	1480	67855
124043	Actinobacillus muris genomic DNA containing partial 16S rRNA gene, 16S rRNA-23S rRNA IGS, type strain CCUG:16938T, isolate ITS	HF912269	245	67855
124043	Actinobacillus muris genomic DNA containing partial 16S rRNA gene, 16S rRNA-23S rRNA IGS, type strain CCUG:16938T, isolate ITSglu	HF912270	512	67855
124043	Actinobacillus muris genomic DNA containing partial 16S rRNA gene, 16S rRNA-23S rRNA IGS, type strain CCUG:16938T, isolate ITSile+ala	HF912271	676	67855
124043	Muribacter muris NCTC 12432 gene for 16S rRNA, partial sequence.	LC752343	585	67855
124043	Muribacter muris strain CCUG 16938 16S ribosomal RNA gene, partial sequence.	MN738501	520	67855

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM103820v1 assembly for Muribacter muris Ackerman80-443D
NCBI: GCA_001038205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.75	no
125439	gram_stain	BacteriaNetⓘ	negative	85.65	no
125439	spore_formation	BacteriaNetⓘ	no	99.05	no
125439	motility	BacteriaNetⓘ	yes	47.72	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	The Likelihood of Misidentifying Rodent Pasteurellaceae by Using Results from a Single PCR Assay.	Dafni H, Greenfeld L, Oren R, Harmelin A.	J Am Assoc Lab Anim Sci	10.30802/aalas-jaalas-18-000049	2019
Phylogeny	A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community.	Joseph S, Aduse-Opoku J, Hashim A, Hanski E, Streich R, Knowles SCL, Pedersen AB, Wade WG, Curtis MA.	mSystems	10.1128/msystems.01222-20	2021
Phylogeny	Reclassification of Actinobacillus muris as Muribacter muris gen. nov., comb. nov.	Nicklas W, Bisgaard M, Aalbaek B, Kuhnert P, Christensen H	Int J Syst Evol Microbiol	10.1099/ijsem.0.000417	2015
Phylogeny	Actinobacillus muris sp. nov. isolated from mice.	Bisgaard M	Acta Pathol Microbiol Immunol Scand B	10.1111/j.1699-0463.1986.tb03013.x	1986

References

#16202	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22206
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34034	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68377	Automatically annotated from API NH .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121198	Collection of Institut Pasteur ; Curators of the CIP; CIP 103439
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Muribacter muris (DSM 22206, ATCC 49577, CCUG 16938)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API NH

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001038205

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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