Name: Muribacter muris 80-443D
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11680

Type strain:

Species: Muribacter muris

Strain Designation: 80-443D, Ackerman80-443D

Culture col. no.: DSM 22206, ATCC 49577, CCUG 16938, CIP 103439, NCTC 12432, CCUG 28285 B

Strain history: CIP <- 1990, CCUG <- M. Bisgaard, Copenhagen, Denmark, Actinobacillus-like, Taxon 12 <- W. Mannheim

NCBI tax ID(s): 67855 (species)

SI-ID 265699

ATCC 49577, CCUG 16938, CCUG 23134, NCTC 12432, CIP 103439, CCUG 28285 B, CCUG 28285, DSM 22206

Special Collections

Other strains from Muribacter muris

Section

Muribacter muris 80-443D is a microaerophile bacterium that was isolated from mouse.

microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pasteurellales*
	Family	*Pasteurellaceae*
	Genus	*Muribacter*
	Species	**Muribacter muris**
	Full Scientific Name (LPSN)	Muribacter muris (Bisgaard 1988) Nicklas et al. 2015

Synonym

Actinobacillus muris

Information on morphological and physiological properties Morphology

[Ref.: #16202]

Type of hemolysis

gamma

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16202]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16202]

Culture medium growth

[Ref.: #16202]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16202]

Culture medium composition

expand / minimize

[Ref.: #34034]

Culture medium

MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola

[Ref.: #34034]

Culture medium growth

[Ref.: #34034]

Culture medium composition

expand / minimize

[Ref.: #121198]

Culture medium

CIP Medium 118-b

[Ref.: #121198]

Culture medium growth

[Ref.: #121198]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #16202]			growth	37 °C
[Ref.: #34034]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16202]

Oxygen tolerance

microaerophile

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68377]	D-fructose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	maltose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH
[Ref.: #68377]	urea ChEBI	+	hydrolysis	* from API NH

	Metabolite production	Metabolite	Production
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #68377]	alkaline phosphatase	+	3.1.3.1	* from API NH
[Ref.: #16202]	catalase	+	1.11.1.6
[Ref.: #16202]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68377]	lipase	+		* from API NH
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #68377]	urease	+	3.5.1.5	* from API NH

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #16202]	6153	+	+	+	+	-	+	+	+	+	-	+	-	-
[Ref.: #16202]	5719	-	+	+	+	+	-	+	+	+	+	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16202]	Sample type/isolated from	mouse

[Ref.: #121198]	Sample type/isolated from	Animal, Mouse, pharynx
* marker position based on {}

Isolation sources categories

#Host

#Mammals

#Muridae (Mouse/Rat)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY362894 (>99% sequence identity) for Muribacter muris subclade from Microbeatlas

Aquatic Samples	23
Soil Samples	14
Animal Samples	1592
Plant Samples	16
Total Samples	1645

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16202]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121198]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16202]	Actinobacillus muris 16S ribosomal RNA gene, complete sequence	AF024526	1480	GenBank ENA	67855 tax ID
[Ref.: #20218]	Muribacter muris strain NCTC 12432 16S ribosomal RNA gene, partial sequence	AY362894	1356	GenBank ENA	67855 tax ID	*
[Ref.: #20218]	Actinobacillus muris partial 16S rRNA gene, strain P1573	AJ438684	429	GenBank ENA	67855 tax ID	*
[Ref.: #124043]	Muribacter muris NCTC 12432 gene for 16S rRNA, partial sequence.	LC752343	585	GenBank ENA	67855 tax ID	*
[Ref.: #124043]	Actinobacillus muris genomic DNA containing partial 16S rRNA gene, 16S rRNA-23S rRNA IGS, type strain CCUG:16938T, isolate ITS	HF912269	245	GenBank ENA	67855 tax ID	*
[Ref.: #124043]	Actinobacillus muris genomic DNA containing partial 16S rRNA gene, 16S rRNA-23S rRNA IGS, type strain CCUG:16938T, isolate ITSglu	HF912270	512	GenBank ENA	67855 tax ID	*
[Ref.: #124043]	Actinobacillus muris genomic DNA containing partial 16S rRNA gene, 16S rRNA-23S rRNA IGS, type strain CCUG:16938T, isolate ITSile+ala	HF912271	676	GenBank ENA	67855 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Muribacter muris Ackerman80-443D	GCA_001038205	contig	GenBank ENA	67855 tax ID	*
[Ref.: #66792]	Muribacter muris Ackerman80-443D	2639762803	draft	JGI IMG/M	67855 tax ID	*

Availability in culture collections External links

[Ref.: #16202]

Culture collection no.

DSM 22206, ATCC 49577, CCUG 16938, CIP 103439, NCTC 12432, CCUG 28285 B

[Ref.: #80900]

SI-ID 265699

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Actinobacillus muris as Muribacter muris gen. nov., comb. nov.	Nicklas W, Bisgaard M, Aalbaek B, Kuhnert P, Christensen H	Int J Syst Evol Microbiol	10.1099/ijsem.0.000417	2015	*
Phylogeny	Actinobacillus muris sp. nov. isolated from mice.	Bisgaard M	Acta Pathol Microbiol Immunol Scand B	10.1111/j.1699-0463.1986.tb03013.x	1986	*

References

#16202

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22206

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34034 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80900

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265699.1 )

#121198 Collection of Institut Pasteur ; Curators of the CIP; CIP 103439

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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