Name: Actinobacillus lignieresii CIP 107665
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11679

Type strain:

Species: Actinobacillus lignieresii

Culture col. no.: CIP 107665, DSM 22256, ATCC 49236, CCUG 41384, CIP 53.130, NCTC 4189

Strain history: CIP <- 1953, NCTC <- L. Thompson

NCBI tax ID(s): 720 (species)

SI-ID 389263

ATCC 49236, NCTC 4189, CCUG 41384, CIP 107665, CIP 53.130, DSM 22256

Special Collections

Other strains from Actinobacillus lignieresii

Section

When using BacDive for research please cite our paper

Actinobacillus lignieresii CIP 107665 is an aerobe, mesophilic human pathogen that was isolated from cattle, throat glands.

aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pasteurellales*
	Family	*Pasteurellaceae*
	Genus	*Actinobacillus*
	Species	**Actinobacillus lignieresii**
	Full Scientific Name (LPSN)	Actinobacillus lignieresii Brumpt 1910 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %98

[Ref.: #125438]	Motility	no Confidence in %92.488

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16238]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #16238]

Culture medium growth

[Ref.: #16238]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16238]

Culture medium composition

expand / minimize

[Ref.: #33854]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33854]

Culture medium growth

[Ref.: #33854]

Culture medium composition

expand / minimize

[Ref.: #41297]

Culture medium

MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola

[Ref.: #41297]

Culture medium growth

[Ref.: #41297]

Culture medium composition

expand / minimize

[Ref.: #120597]

Culture medium

CIP Medium 118-b

[Ref.: #120597]

Culture medium growth

[Ref.: #120597]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16238]	growth	37 °C
[Ref.: #33854]	growth	37 °C
[Ref.: #41297]	growth	37 °C
[Ref.: #55040]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #55040]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %96.8

[Ref.: #125438]

Ability of spore formation

no Confidence in %90.699

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68377]	D-fructose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	maltose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH

	Metabolite production	Metabolite	Production
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #68377]	alkaline phosphatase	+	3.1.3.1	* from API NH
[Ref.: #68377]	gamma-glutamyltransferase	-	2.3.2.2	* from API NH
[Ref.: #68377]	proline-arylamidase	-	3.4.11.5	* from API NH
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #16238]	6815	+	+	+	+	-	+	-	+	+	-	-	-	-
[Ref.: #16238]	6371	-	+	+	+	+	-	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16238]	Sample type/isolated from	cattle, throat glands

[Ref.: #55040]	Sample type/isolated from	Cattle,retropharyngal gland
[Ref.: #55040]	Sampling date	1933
[Ref.: #55040]	Geographic location (country and/or sea, region)	Copenhagen
[Ref.: #55040]	Country	Denmark
[Ref.: #55040]	Country ISO 3 Code	DNK
[Ref.: #55040]	Continent	Europe

[Ref.: #120597]	Sample type/isolated from	Animal, Cattle, retropharyngeal gland
[Ref.: #120597]	Geographic location (country and/or sea, region)	Copenhagen
[Ref.: #120597]	Country	Denmark
[Ref.: #120597]	Country ISO 3 Code	DNK
[Ref.: #120597]	Continent	Europe
[Ref.: #120597]	Isolation date	1933
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Oral cavity and airways	#Throat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence M75068 (>99% sequence identity) for Actinobacillus from Microbeatlas

Aquatic Samples	203
Soil Samples	221
Animal Samples	5580
Plant Samples	19
Total Samples	6023

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16238]	Pathogenicity (human)	yes
[Ref.: #16238]	Pathogenicity (animal)	yes
[Ref.: #16238]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #120597]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16238]	Actinobacillus lignieresii strain NCTC 4189 16S ribosomal RNA gene, partial sequence	AY362892	1364	GenBank ENA	720 tax ID
[Ref.: #20218]	Actinobacillus lignieresii partial 16S rRNA gene, strain P151	AJ438688	437	GenBank ENA	720 tax ID	*
[Ref.: #20218]	Actinobacillus lignieresii strain NCTC 4189 16S ribosomal RNA gene, partial sequence	M75068	1487	GenBank ENA	720 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinobacillus lignieresii NCTC4189	GCA_900444945	contig	GenBank ENA	720 tax ID	*
[Ref.: #66792]	Actinobacillus lignieresii strain NCTC4189	720.4	wgs	PATRIC	720 tax ID	*
[Ref.: #66792]	Actinobacillus lignieresii NCTC 4189	2808606643	draft	JGI IMG/M	720 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinobacillus lignieresii strain NCTC4189 PATRIC: 720.4
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	92.983	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	90.699	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	79.459	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	92.488	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinobacillus lignieresii NCTC4189 NCBI: GCA_900444945
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	84.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	63.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	61.5
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	96.8

Availability in culture collections External links

[Ref.: #16238]

Culture collection no.

CIP 107665, DSM 22256, ATCC 49236, CCUG 41384, CIP 53.130, NCTC 4189

[Ref.: #80899]

SI-ID 389263

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Orbus hercynius gen. nov., sp. nov., isolated from faeces of wild boar, is most closely related to members of the orders 'Enterobacteriales' and Pasteurellales.	Volkmann M, Skiebe E, Kerrinnes T, Faber F, Lepka D, Pfeifer Y, Holland G, Bannert N, Wilharm G	Int J Syst Evol Microbiol	10.1099/ijs.0.019026-0	2009	*

References

#16238

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22256

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33854 ; Curators of the CIP;
#41297 ; Curators of the CIP;
#55040 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 41384

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#80899

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389263.1 )

#120597 Collection of Institut Pasteur ; Curators of the CIP; CIP 53.130

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Actinobacillus lignieresii strain NCTC4189

Actinobacillus lignieresii NCTC4189

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