Strain identifier

BacDive ID: 11680

Type strain: Yes

Species: Muribacter muris

Strain Designation: 80-443D, Ackerman80-443D

Strain history: CIP <- 1990, CCUG <- M. Bisgaard, Copenhagen, Denmark, Actinobacillus-like, Taxon 12 <- W. Mannheim

NCBI tax ID(s): 67855 (species)

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General

@ref: 16202

BacDive-ID: 11680

DSM-Number: 22206

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Muribacter muris 80-443D is a microaerophile, mesophilic bacterium that was isolated from mouse.

NCBI tax id

  • NCBI tax id: 67855
  • Matching level: species

strain history

@refhistory
16202<- CCUG; CCUG 28285 B <- R. Gherna, ATCC <- CCUG <- M. Bisgaard <- J.J. Ackermann
121198CIP <- 1990, CCUG <- M. Bisgaard, Copenhagen, Denmark, Actinobacillus-like, Taxon 12 <- W. Mannheim

doi: 10.13145/bacdive11680.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Muribacter
  • species: Muribacter muris
  • full scientific name: Muribacter muris (Bisgaard 1988) Nicklas et al. 2015

  • synonyms

    • @ref: 20215
    • synonym: Actinobacillus muris

@ref: 16202

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Muribacter

species: Muribacter muris

full scientific name: Muribacter muris (Bisgaard 1988) Nicklas et al. 2015

strain designation: 80-443D, Ackerman80-443D

type strain: yes

Morphology

colony morphology

  • @ref: 16202
  • type of hemolysis: gamma

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16202COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
34034MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
121198CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperaturerange
16202positivegrowth37mesophilic
34034positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 16202
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837716199urea+hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
16202catalase+1.11.1.6
16202cytochrome-c oxidase+1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377alkaline phosphatase+3.1.3.1
68377lipase+
68377urease+3.5.1.5

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
16202++++-++++-+--
16202-++++-++++-+-

Isolation, sampling and environmental information

isolation

@refsample type
16202mouse
121198Animal, Mouse, pharynx

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Muridae (Mouse/Rat)

taxonmaps

  • @ref: 69479
  • File name: preview.99_520.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_332;97_370;98_422;99_520&stattab=map
  • Last taxonomy: Muribacter muris subclade
  • 16S sequence: AY362894
  • Sequence Identity:
  • Total samples: 1645
  • soil counts: 14
  • aquatic counts: 23
  • animal counts: 1592
  • plant counts: 16

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
162021Risk group (German classification)
1211981Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Actinobacillus muris partial 16S rRNA gene, strain P1573AJ438684429ena67855
20218Actinobacillus muris strain NCTC 12432 16S ribosomal RNA gene, partial sequenceAY3628941356ena67855
16202Actinobacillus muris 16S ribosomal RNA gene, complete sequenceAF0245261480ena67855

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Muribacter muris Ackerman80-443DGCA_001038205contigncbi67855
66792Muribacter muris Ackerman80-443D2639762803draftimg67855

External links

@ref: 16202

culture collection no.: DSM 22206, ATCC 49577, CCUG 16938, CIP 103439, NCTC 12432, CCUG 28285 B

straininfo link

  • @ref: 80900
  • straininfo: 265699

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny3728022Actinobacillus muris sp. nov. isolated from mice.Bisgaard MActa Pathol Microbiol Immunol Scand B10.1111/j.1699-0463.1986.tb03013.x1986Actinobacillus/*classification/genetics, Animals, DNA, Bacterial/analysis, Mice/*microbiology, Nucleic Acid Hybridization, Pharynx/microbiology, PhenotypePhenotype
Phylogeny26296776Reclassification of Actinobacillus muris as Muribacter muris gen. nov., comb. nov.Nicklas W, Bisgaard M, Aalbaek B, Kuhnert P, Christensen HInt J Syst Evol Microbiol10.1099/ijsem.0.0004172015Actinobacillus/classification, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Genotype, Mice, Molecular Sequence Data, Pasteurellaceae/*classification, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rats, Sequence Analysis, DNAGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16202Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22206)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22206
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34034Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15237
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80900Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID265699.1StrainInfo: A central database for resolving microbial strain identifiers
121198Curators of the CIPCollection of Institut Pasteur (CIP 103439)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103439