Strain identifier
BacDive ID: 11680
Type strain: 
Species: Muribacter muris
Strain Designation: 80-443D, Ackerman80-443D
Strain history: CIP <- 1990, CCUG <- M. Bisgaard, Copenhagen, Denmark, Actinobacillus-like, Taxon 12 <- W. Mannheim
NCBI tax ID(s): 67855 (species)
version 9 (current version)
General
@ref: 16202
BacDive-ID: 11680
DSM-Number: 22206
keywords: genome sequence, 16S sequence, Bacteria, microaerophile
description: Muribacter muris 80-443D is a microaerophile bacterium that was isolated from mouse.
NCBI tax id
- NCBI tax id: 67855
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16202 | <- CCUG; CCUG 28285 B <- R. Gherna, ATCC <- CCUG <- M. Bisgaard <- J.J. Ackermann |
| 121198 | CIP <- 1990, CCUG <- M. Bisgaard, Copenhagen, Denmark, Actinobacillus-like, Taxon 12 <- W. Mannheim |
doi: 10.13145/bacdive11680.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Muribacter
- species: Muribacter muris
- full scientific name: Muribacter muris (Bisgaard 1988) Nicklas et al. 2015
synonyms
- @ref: 20215
- synonym: Actinobacillus muris
@ref: 16202
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Muribacter
species: Muribacter muris
full scientific name: Muribacter muris (Bisgaard 1988) Nicklas et al. 2015
strain designation: 80-443D, Ackerman80-443D
type strain: yes
Morphology
colony morphology
- @ref: 16202
- type of hemolysis: gamma
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 16202 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
| 34034 | MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola | yes | Distilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g) | |
| 121198 | CIP Medium 118-b | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 16202 | positive | growth | 37 |
| 34034 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
- @ref: 16202
- oxygen tolerance: microaerophile
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68377 | 17634 | D-glucose | + | builds acid from |
| 68377 | 15824 | D-fructose | + | builds acid from |
| 68377 | 17306 | maltose | + | builds acid from |
| 68377 | 16199 | urea | + | hydrolysis |
| 68377 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 16202 | catalase | + | 1.11.1.6 |
| 16202 | cytochrome-c oxidase | + | 1.9.3.1 |
| 68377 | tryptophan deaminase | - | 4.1.99.1 |
| 68377 | alkaline phosphatase | + | 3.1.3.1 |
| 68377 | lipase | + | |
| 68377 | urease | + | 3.5.1.5 |
API NH
| @ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16202 | + | + | + | + | - | + | + | + | + | - | + | - | - |
| 16202 | - | + | + | + | + | - | + | + | + | + | - | + | - |
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 16202 | mouse |
| 121198 | Animal, Mouse, pharynx |
isolation source categories
- Cat1: #Host
- Cat2: #Mammals
- Cat3: #Muridae (Mouse/Rat)
taxonmaps
- @ref: 69479
- File name: preview.99_520.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_332;97_370;98_422;99_520&stattab=map
- Last taxonomy: Muribacter muris subclade
- 16S sequence: AY362894
- Sequence Identity:
- Total samples: 1645
- soil counts: 14
- aquatic counts: 23
- animal counts: 1592
- plant counts: 16
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 16202 | 1 | Risk group (German classification) |
| 121198 | 1 | Risk group (French classification) |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Actinobacillus muris partial 16S rRNA gene, strain P1573 | AJ438684 | 429 | nuccore | 67855 |
| 20218 | Muribacter muris strain NCTC 12432 16S ribosomal RNA gene, partial sequence | AY362894 | 1356 | nuccore | 67855 |
| 16202 | Actinobacillus muris 16S ribosomal RNA gene, complete sequence | AF024526 | 1480 | nuccore | 67855 |
| 124043 | Actinobacillus muris genomic DNA containing partial 16S rRNA gene, 16S rRNA-23S rRNA IGS, type strain CCUG:16938T, isolate ITS | HF912269 | 245 | nuccore | 67855 |
| 124043 | Actinobacillus muris genomic DNA containing partial 16S rRNA gene, 16S rRNA-23S rRNA IGS, type strain CCUG:16938T, isolate ITSglu | HF912270 | 512 | nuccore | 67855 |
| 124043 | Actinobacillus muris genomic DNA containing partial 16S rRNA gene, 16S rRNA-23S rRNA IGS, type strain CCUG:16938T, isolate ITSile+ala | HF912271 | 676 | nuccore | 67855 |
| 124043 | Muribacter muris NCTC 12432 gene for 16S rRNA, partial sequence. | LC752343 | 585 | nuccore | 67855 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Muribacter muris Ackerman80-443D | GCA_001038205 | contig | ncbi | 67855 |
| 66792 | Muribacter muris Ackerman80-443D | 2639762803 | draft | img | 67855 |
External links
@ref: 16202
culture collection no.: DSM 22206, ATCC 49577, CCUG 16938, CIP 103439, NCTC 12432, CCUG 28285 B
straininfo link
- @ref: 80900
- straininfo: 265699
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 3728022 | Actinobacillus muris sp. nov. isolated from mice. | Bisgaard M | Acta Pathol Microbiol Immunol Scand B | 10.1111/j.1699-0463.1986.tb03013.x | 1986 | Actinobacillus/*classification/genetics, Animals, DNA, Bacterial/analysis, Mice/*microbiology, Nucleic Acid Hybridization, Pharynx/microbiology, Phenotype | Phenotype |
| Phylogeny | 26296776 | Reclassification of Actinobacillus muris as Muribacter muris gen. nov., comb. nov. | Nicklas W, Bisgaard M, Aalbaek B, Kuhnert P, Christensen H | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000417 | 2015 | Actinobacillus/classification, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Genotype, Mice, Molecular Sequence Data, Pasteurellaceae/*classification, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rats, Sequence Analysis, DNA | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16202 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22206) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22206 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 34034 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15237 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 68377 | Automatically annotated from API NH | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 80900 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID265699.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 121198 | Curators of the CIP | Collection of Institut Pasteur (CIP 103439) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103439 | |||
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |