Name: Actinopolymorpha alba DSM 45243
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11160

Type strain:

Species: Actinopolymorpha alba

Culture col. no.: DSM 45243, CCTCC AA 208030, JCM 16897, YIM 48868

Strain history: DSM 45243 <-- S.-K. Tang <-- Y.-R. Cao YIM 48868.

NCBI tax ID(s): 1120950 (strain), 533267 (species)

SI-ID 399030

DSM 45243

Special Collections

Section

Actinopolymorpha alba DSM 45243 is an aerobe, Gram-positive bacterium that was isolated from forest, rhizosphere soil.

Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Actinopolymorphaceae*
	Genus	*Actinopolymorpha*
	Species	**Actinopolymorpha alba**
	Full Scientific Name (LPSN)	Actinopolymorpha alba Cao et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29289]	Gram stain	positive

[Ref.: #69480]	Motility	no Confidence in %91

[Ref.: #29289]

Pigment production

Multimedia content

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Intellectual property rights:

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #15914]	growth	28 °C
[Ref.: #29289]	growth	10-45 °C
[Ref.: #29289]	optimum	27.5 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #29289]			optimum	6.5
[Ref.: #29289]			growth	6.0-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29289]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29289]		NaCl		growth	<7	%

[Ref.: #29289]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-9(H₆), MK-9(H₈), MK-10(H₆), MK-10(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29289]	alanine ChEBI	+	carbon source
[Ref.: #29289]	arabinose ChEBI	+	carbon source
[Ref.: #29289]	asparagine ChEBI	+	carbon source
[Ref.: #29289]	dextrin ChEBI	+	carbon source
[Ref.: #29289]	fucose ChEBI	+	carbon source
[Ref.: #29289]	glucose ChEBI	+	carbon source
[Ref.: #29289]	maltose ChEBI	+	carbon source
[Ref.: #29289]	mannose ChEBI	+	carbon source
[Ref.: #29289]	phenylalanine ChEBI	+	carbon source
[Ref.: #29289]	proline ChEBI	+	carbon source
[Ref.: #29289]	raffinose ChEBI	+	carbon source
[Ref.: #29289]	rhamnose ChEBI	+	carbon source
[Ref.: #29289]	ribose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29289]	catalase	+	1.11.1.6
[Ref.: #29289]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29289]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15914]	Sample type/isolated from	forest, rhizosphere soil
[Ref.: #15914]	Geographic location (country and/or sea, region)	Yunnan Province, Xishuangbanna
[Ref.: #15914]	Country	China
[Ref.: #15914]	Country ISO 3 Code	CHN
[Ref.: #15914]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rhizosphere soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xishuangbanna
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU706350 (>99% sequence identity) for Actinopolymorpha alba subclade from Microbeatlas

Aquatic Samples	9
Soil Samples	257
Animal Samples	36
Plant Samples	25
Total Samples	327

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15914]	Actinopolymorpha alba strain YIM 48868 16S ribosomal RNA gene, partial sequence	EU706350	1420	GenBank ENA	533267 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinopolymorpha alba DSM 45243	GCA_000373925	scaffold	GenBank ENA	1120950 tax ID
[Ref.: #66792]	Actinopolymorpha alba DSM 45243	1120950.3	wgs	PATRIC	1120950 tax ID	*
[Ref.: #66792]	Actinopolymorpha alba DSM 45243	2515154155	draft	JGI IMG/M	1120950 tax ID	*

[Ref.: #15914]	GC-content	66.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29289]	GC-content	66.6 mol%
[Ref.: #67770]	GC-content	67.9 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinopolymorpha alba DSM 45243 PATRIC: 1120950.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.003	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.401	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	73.733	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.519	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.75	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	no

Availability in culture collections External links

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Culture collection no.

DSM 45243, CCTCC AA 208030, JCM 16897, YIM 48868

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SI-ID 399030

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tenggerimyces mesophilus gen. nov., sp. nov., a member of the family Nocardioidaceae.	Sun HM, Zhang T, Wei YZ, Liu HY, Yu LY, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000421	2015	*
Phylogeny	Flindersiella endophytica gen. nov., sp. nov., an endophytic actinobacterium isolated from the root of Grey Box, an endemic eucalyptus tree.	Kaewkla O, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijs.0.026757-0	2010	*
Phylogeny	Actinopolymorpha alba sp. nov., isolated from a rhizosphere soil.	Cao YR, Jiang Y, Wu JY, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.010280-0	2009	*

References

#15914

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45243

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29289

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25705 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80409

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399030.1 )

#25705

IJSEM 2200 2009 ( DOI 10.1099/ijs.0.010280-0 , PubMed 19605725 )

* These data were automatically processed and therefore are not curated

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