Name: Actinopolymorpha rutila DSM 18448
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11159

Type strain:

Species: Actinopolymorpha rutila

Culture col. no.: DSM 18448, CCTCC AA 206004, JCM 16537, YIM 45725

Strain history: DSM 18448 <-- S.-K. Tang <-- Y.-X. Wang YIM 45725.

NCBI tax ID(s): 446787 (species)

SI-ID 396798

DSM 18448

Special Collections

Section

Actinopolymorpha rutila DSM 18448 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from forest soil.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Actinopolymorphaceae*
	Genus	*Actinopolymorpha*
	Species	**Actinopolymorpha rutila**
	Full Scientific Name (LPSN)	Actinopolymorpha rutila Wang et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32524]	Gram stain	positive

[Ref.: #32524]	Cell shape	rod-shaped

[Ref.: #32524]	Motility	no

[Ref.: #18319]	Colony color	Salmon orange (2012)
[Ref.: #18319]	Incubation period	10-14 days
[Ref.: #18319]	Cultivation medium used	ISP 2

[Ref.: #18319]	Colony color	Salmon orange (2012)
[Ref.: #18319]	Incubation period	10-14 days
[Ref.: #18319]	Cultivation medium used	ISP 3

[Ref.: #18319]	Colony color	Beige red (3012)
[Ref.: #18319]	Incubation period	10-14 days
[Ref.: #18319]	Cultivation medium used	ISP 4

[Ref.: #18319]	Colony color	Ivory (1014)
[Ref.: #18319]	Incubation period	10-14 days
[Ref.: #18319]	Cultivation medium used	ISP 5

[Ref.: #18319]	Colony color	Salmon orange (2012)
[Ref.: #18319]	Incubation period	10-14 days
[Ref.: #18319]	Cultivation medium used	ISP 6

[Ref.: #18319]	Colony color	Beige red (3012)
[Ref.: #18319]	Incubation period	10-14 days
[Ref.: #18319]	Cultivation medium used	ISP 7

[Ref.: #32524]

Pigment production

yes

[Ref.: #18319]	Multicellular complex forming ability	no
[Ref.: #18319]	Medium Name (multicellularity)	ISP 2

[Ref.: #18319]	Multicellular complex forming ability	no
[Ref.: #18319]	Medium Name (multicellularity)	ISP 3

[Ref.: #18319]	Multicellular complex forming ability	no
[Ref.: #18319]	Medium Name (multicellularity)	ISP 4

[Ref.: #18319]	Multicellular complex forming ability	no
[Ref.: #18319]	Medium Name (multicellularity)	ISP 5

[Ref.: #18319]	Multicellular complex forming ability	no
[Ref.: #18319]	Medium Name (multicellularity)	ISP 6

[Ref.: #18319]	Multicellular complex forming ability	no
[Ref.: #18319]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7477]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #18319]

Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #18319]

Culture medium

ISP 7

[Ref.: #18319]

Culture medium growth

[Ref.: #18319]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7477]	growth	28 °C
[Ref.: #18319]	optimum	28 °C
[Ref.: #32524]	growth	15-37 °C
[Ref.: #32524]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #32524]			optimum	06-08
[Ref.: #32524]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32524]

Oxygen tolerance

aerobe

[Ref.: #32524]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	yes Confidence in %91

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32524]		NaCl		growth	0-5	%
[Ref.: #32524]		NaCl		optimum	0-5	%

[Ref.: #32524]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32524]	cellobiose ChEBI	+	carbon source
[Ref.: #32524]	galactose ChEBI	+	carbon source
[Ref.: #32524]	lactose ChEBI	+	carbon source
[Ref.: #32524]	malonate ChEBI	+	carbon source
[Ref.: #32524]	maltose ChEBI	+	carbon source
[Ref.: #32524]	mannose ChEBI	+	carbon source
[Ref.: #32524]	melibiose ChEBI	+	carbon source
[Ref.: #32524]	raffinose ChEBI	+	carbon source
[Ref.: #32524]	ribitol ChEBI	+	carbon source
[Ref.: #32524]	ribose ChEBI	+	carbon source
[Ref.: #32524]	salicin ChEBI	+	carbon source
[Ref.: #32524]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32524]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #32524]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18319]	29	not determinedn.d.	+	+	+	-	+	+	-	-	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7477]	Sample type/isolated from	forest soil
[Ref.: #7477]	Geographic location (country and/or sea, region)	Yunnan Province, south-west China
[Ref.: #7477]	Country	China
[Ref.: #7477]	Country ISO 3 Code	CHN
[Ref.: #7477]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil in Yunnan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF601829 (>99% sequence identity) for Actinopolymorpha from Microbeatlas

Aquatic Samples	38
Soil Samples	505
Animal Samples	37
Plant Samples	53
Total Samples	633

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18319]	Biosafety level	1	German classification
[Ref.: #7477]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7477]	Actinopolymorpha rutilus strain YIM 45725 16S ribosomal RNA gene, partial sequence	EF601829	1429	GenBank ENA	446787 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinopolymorpha rutila DSM 18448	GCA_013407855	contig	GenBank ENA	446787 tax ID
[Ref.: #66792]	Actinopolymorpha rutila strain DSM 18448	446787.3	wgs	PATRIC	446787 tax ID	*
[Ref.: #66792]	Actinopolymorpha rutila DSM 18448	2830934857	draft	JGI IMG/M	446787 tax ID	*

[Ref.: #7477]	GC-content	67.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32524]	GC-content	67.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinopolymorpha rutila strain DSM 18448 PATRIC: 446787.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	91	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinopolymorpha rutila strain DSM 18448 PATRIC: 446787.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.503	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.863	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	69.864	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.9	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.422	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	no

Availability in culture collections External links

[Ref.: #7477]

Culture collection no.

DSM 18448, CCTCC AA 206004, JCM 16537, YIM 45725

[Ref.: #80408]

SI-ID 396798

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinopolymorpha pittospori sp. nov., an endophyte isolated from surface-sterilized leaves of an apricot tree (Pittosporum phylliraeoides).	Kaewkla O, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijs.0.029579-0	2010	*
Phylogeny	Actinopolymorpha alba sp. nov., isolated from a rhizosphere soil.	Cao YR, Jiang Y, Wu JY, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.010280-0	2009	*
Phylogeny	Actinopolymorpha rutila sp. nov., isolated from a forest soil.	Wang YX, Zhang YQ, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65629-0	2008	*

References

#7477

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18448

#18319

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32524

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28743 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80408

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396798.1 )

#28743

IJSEM 2443 2008 ( DOI 10.1099/ijs.0.65629-0 , PubMed 18842872 )

* These data were automatically processed and therefore are not curated

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Actinopolymorpha rutila strain DSM 18448

Actinopolymorpha rutila strain DSM 18448

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