Name: Actinopolymorpha cephalotaxi 06-2230
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11161

Type strain:

Species: Actinopolymorpha cephalotaxi

Strain Designation: 06-2230, I06-2230, 5DSM 45117, 5CCM 7466

Culture col. no.: DSM 45117, CCM 7466, KCTC 19293, JCM 17964, CPCC 202808

Strain history: <- YQ Zhang, Inst. Med. Biotechnol, China

NCBI tax ID(s): 504797 (species)

Section

Actinopolymorpha cephalotaxi 06-2230 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from forest soil from the rhizosphere of Cephalotaxus fortunei.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Actinopolymorphaceae*
	Genus	*Actinopolymorpha*
	Species	**Actinopolymorpha cephalotaxi**
	Full Scientific Name (PNU)	Actinopolymorpha cephalotaxi Yuan et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29341]	Gram stain	positive

[Ref.: #67771]	Gram stain	positive

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.021

[Ref.: #29341]

Pigment production

yes

Multimedia content

[Ref.: #12356]

Caption:

Medium 553 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12356]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12356]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #12356]

Culture medium composition

expand / minimize

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #12356]

Culture medium growth

[Ref.: #12356]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #12356]

Culture medium composition

expand / minimize

[Ref.: #12356]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #12356]

Culture medium growth

[Ref.: #12356]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #12356]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12356]	growth	28 °C
[Ref.: #19917]	optimum	28 °C
[Ref.: #29341]	growth	20-28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #12356]	Temperature range	mesophilic
[Ref.: #19917]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29341]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29341]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]

Ability of spore formation

yes Confidence in %90

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29341]		NaCl		growth	<5	%

[Ref.: #67770]	Observation	quinones: MK-9(H₄)
[Ref.: #67771]	Observation	quinones: MK-9(H4)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29341]	arabinose ChEBI	+	carbon source
[Ref.: #29341]	fructose ChEBI	+	carbon source
[Ref.: #29341]	galactose ChEBI	+	carbon source
[Ref.: #29341]	glucosamine ChEBI	+	carbon source
[Ref.: #29341]	glucose ChEBI	+	carbon source
[Ref.: #29341]	mannitol ChEBI	+	carbon source
[Ref.: #29341]	myo-inositol ChEBI	+	carbon source
[Ref.: #29341]	nitrate ChEBI	+	reduction
[Ref.: #29341]	raffinose ChEBI	+	carbon source
[Ref.: #29341]	rhamnose ChEBI	+	carbon source
[Ref.: #29341]	sorbitol ChEBI	+	carbon source
[Ref.: #29341]	sucrose ChEBI	+	carbon source
[Ref.: #29341]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29341]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #29341]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #29341]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #29341]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #29341]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19917]	728	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12356]	Sample type/isolated from	forest soil from the rhizosphere of Cephalotaxus fortunei
[Ref.: #12356]	Host species	Cephalotaxus fortunei
[Ref.: #12356]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #12356]	Country	China
[Ref.: #12356]	Country ISO 3 Code	CHN
[Ref.: #12356]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rhizosphere soil of the plant Cephalotaxus fortunei from Yunnan Province
[Ref.: #67770]	Host species	Cephalotaxus fortunei
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From forest soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU438909 (>99% sequence identity) for Actinopolymorpha from Microbeatlas

Aquatic Samples	38
Soil Samples	505
Animal Samples	37
Plant Samples	53
Total Samples	633

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12356]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12356]	Actinopolymorpha cephalotaxi strain I06-2230 16S ribosomal RNA gene, partial sequence	EU438909	1441	ENA	504797 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinopolymorpha cephalotaxi CPCC 202808	GCA_900113145	scaffold	GenBank	504797 tax ID
[Ref.: #67770]	Actinopolymorpha cephalotaxi DSM 45117	GCA_013408535	contig	GenBank	504797 tax ID
[Ref.: #66792]	Actinopolymorpha cephalotaxi strain CPCC 202808	504797.4	wgs	PATRIC	504797 tax ID	*
[Ref.: #66792]	Actinopolymorpha cephalotaxi strain DSM 45117	504797.5	wgs	PATRIC	504797 tax ID	*
[Ref.: #66792]	Actinopolymorpha cephalotaxi DSM 45117	2827628540	draft	JGI IMG/M	504797 tax ID	*
[Ref.: #66792]	Actinopolymorpha cephalotaxi CPCC 202808	2675903058	draft	JGI IMG/M	504797 tax ID	*

[Ref.: #12356]	GC-content	69.3 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29341]	GC-content	69.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinopolymorpha cephalotaxi CPCC 202808 NCBI: GCA_900113145.1
[Ref.: #69480]	gram-positive	yes	100	no
[Ref.: #69480]	spore-forming	no	63.657	no
[Ref.: #69480]	anaerobic	no	98.797	no
[Ref.: #69480]	thermophile	no	95.484	no
[Ref.: #69480]	motile	no	94.021	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinopolymorpha cephalotaxi CPCC 202808 NCBI: GCA_900113145.1
[Ref.: #69481]	spore-forming	yes	90	no

Availability in culture collections External links

[Ref.: #12356]

Culture collection no.

DSM 45117, CCM 7466, KCTC 19293, JCM 17964, CPCC 202808

[Ref.: #20218]

Associated Passport(s) in StrainInfo

849629, 849628, 849630

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinopolymorpha pittospori sp. nov., an endophyte isolated from surface-sterilized leaves of an apricot tree (Pittosporum phylliraeoides).	Kaewkla O, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijs.0.029579-0	2010	*
Phylogeny	Actinopolymorpha cephalotaxi sp. nov., a novel actinomycete isolated from rhizosphere soil of the plant Cephalotaxus fortunei.	Yuan LJ, Zhang YQ, Yu LY, Sun CH, Wei YZ, Liu HY, Li WJ, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijs.0.011197-0	2009	*

References

#12356

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45117

#19917

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29341

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25753 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#25753

IJSEM 51 2010 ( DOI 10.1099/ijs.0.011197-0 , PubMed 19648316 )

* These data were automatically processed and therefore are not curated

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Actinopolymorpha cephalotaxi CPCC 202808

Actinopolymorpha cephalotaxi CPCC 202808

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