Strain identifier

BacDive ID: 11160

Type strain: Yes

Species: Actinopolymorpha alba

Strain history: DSM 45243 <-- S.-K. Tang <-- Y.-R. Cao YIM 48868.

NCBI tax ID(s): 1120950 (strain), 533267 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 15914

BacDive-ID: 11160

DSM-Number: 45243

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Actinopolymorpha alba DSM 45243 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from forest, rhizosphere soil.

NCBI tax id

NCBI tax idMatching level
1120950strain
533267species

strain history

@refhistory
15914<- S.-K. Tang, YIM; YIM 48868 <- Y.-R. Cao
67770DSM 45243 <-- S.-K. Tang <-- Y.-R. Cao YIM 48868.

doi: 10.13145/bacdive11160.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Actinopolymorphaceae
  • genus: Actinopolymorpha
  • species: Actinopolymorpha alba
  • full scientific name: Actinopolymorpha alba Cao et al. 2009

@ref: 15914

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinopolymorphaceae

genus: Actinopolymorpha

species: Actinopolymorpha alba

full scientific name: Actinopolymorpha alba Cao et al. 2009 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

  • @ref: 29289
  • gram stain: positive

pigmentation

  • @ref: 29289
  • production: no

multimedia

@refmultimedia contentintellectual property rightscaption
15914https://www.dsmz.de/microorganisms/photos/DSM_45243-1.jpg© Leibniz-Institut DSMZ
15914https://www.dsmz.de/microorganisms/photos/DSM_45243.jpg© Leibniz-Institut DSMZMedium 65 28°C

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15914GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
15914TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
15914ISP2 MEDIUM (DSMZ Medium 987)yeshttps://mediadive.dsmz.de/medium/987Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15914positivegrowth28mesophilic
29289positivegrowth10-45
29289positiveoptimum27.5mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepH
29289positivegrowth6.0-7.0
29289positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 29289
  • oxygen tolerance: aerobe

halophily

  • @ref: 29289
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <7 %

observation

@refobservation
29289aggregates in clumps
67770quinones: MK-9(H6), MK-9(H8), MK-10(H6), MK-10(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2928916449alanine+carbon source
2928922599arabinose+carbon source
2928922653asparagine+carbon source
2928923652dextrin+carbon source
2928933984fucose+carbon source
2928917234glucose+carbon source
2928917306maltose+carbon source
2928937684mannose+carbon source
2928928044phenylalanine+carbon source
2928926271proline+carbon source
2928916634raffinose+carbon source
2928926546rhamnose+carbon source
2928933942ribose+carbon source

enzymes

@refvalueactivityec
29289catalase+1.11.1.6
29289gelatinase+
29289cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15914forest, rhizosphere soilYunnan Province, XishuangbannaChinaCHNAsia
67770Rhizosphere soilXishuangbannaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_44791.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_779;96_20597;97_25630;98_32499;99_44791&stattab=map
  • Last taxonomy: Actinopolymorpha alba subclade
  • 16S sequence: EU706350
  • Sequence Identity:
  • Total samples: 327
  • soil counts: 257
  • aquatic counts: 9
  • animal counts: 36
  • plant counts: 25

Safety information

risk assessment

  • @ref: 15914
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15914
  • description: Actinopolymorpha alba strain YIM 48868 16S ribosomal RNA gene, partial sequence
  • accession: EU706350
  • length: 1420
  • database: ena
  • NCBI tax ID: 533267

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinopolymorpha alba DSM 452431120950.3wgspatric1120950
66792Actinopolymorpha alba DSM 452432515154155draftimg1120950
67770Actinopolymorpha alba DSM 45243GCA_000373925scaffoldncbi1120950

GC content

@refGC-contentmethod
1591466.6high performance liquid chromatography (HPLC)
2928966.6
6777067.9genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno89.558no
flagellatedno98.479no
gram-positiveyes89.79yes
anaerobicno98.771yes
aerobicyes90.233no
halophileno88.173yes
spore-formingyes67.513no
thermophileno93.606yes
glucose-utilyes86.169no
glucose-fermentno90.932no

External links

@ref: 15914

culture collection no.: DSM 45243, CCTCC AA 208030, JCM 16897, YIM 48868

straininfo link

  • @ref: 80409
  • straininfo: 399030

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19605725Actinopolymorpha alba sp. nov., isolated from a rhizosphere soil.Cao YR, Jiang Y, Wu JY, Xu LH, Jiang CLInt J Syst Evol Microbiol10.1099/ijs.0.010280-02009Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Aerobiosis, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Maytenus/*microbiology, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pigments, Biological/biosynthesis, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analysisGenetics
Phylogeny20889769Flindersiella endophytica gen. nov., sp. nov., an endophytic actinobacterium isolated from the root of Grey Box, an endemic eucalyptus tree.Kaewkla O, Franco CMMInt J Syst Evol Microbiol10.1099/ijs.0.026757-02010Actinomycetales/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Bacterial Typing Techniques, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Eucalyptus/*microbiology, Glucose/analysis, Molecular Sequence Data, Phylogeny, Plant Roots/microbiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhamnose/analysis, Ribose/analysis, Sequence Analysis, DNAGenetics
Phylogeny26297147Tenggerimyces mesophilus gen. nov., sp. nov., a member of the family Nocardioidaceae.Sun HM, Zhang T, Wei YZ, Liu HY, Yu LY, Zhang YQInt J Syst Evol Microbiol10.1099/ijsem.0.0004212015Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15914Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45243)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45243
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29289Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2570528776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80409Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID399030.1StrainInfo: A central database for resolving microbial strain identifiers