Name: Aeromicrobium tamlense SSW1-57
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11063

Type strain:

Species: Aeromicrobium tamlense

Strain Designation: SSW1-57

Culture col. no.: DSM 19087, JCM 13811, NRRL B-24466, CIP 109549

Strain history: CIP <- 2007, JCM <- 2006, S. D. Lee, Cheju Nat. Univ., Jeju, Rep. of Korea: strain SSW1-57

NCBI tax ID(s): 375541 (species)

SI-ID 297115

JCM 13811, NRRL B-24466, DSM 19087, CIP 109549

Section

Aeromicrobium tamlense SSW1-57 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from dried seaweed.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Aeromicrobium*
	Species	**Aeromicrobium tamlense**
	Full Scientific Name (LPSN)	Aeromicrobium tamlense Lee and Kim 2007

Information on morphological and physiological properties Morphology

[Ref.: #31828]	Gram stain	positive
[Ref.: #123426]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31828]	Cell length	2.15 µm

[Ref.: #31828]	Cell width	0.5 µm

[Ref.: #31828]	Cell shape	rod-shaped
[Ref.: #123426]	Cell shape	rod-shaped

[Ref.: #31828]	Motility	no
[Ref.: #123426]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %96.208

[Ref.: #31828]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7879]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7879]

Culture medium growth

[Ref.: #7879]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7879]

Culture medium composition

expand / minimize

[Ref.: #37763]

Culture medium

MEDIUM 112 - for Janibacter

[Ref.: #37763]

Culture medium growth

[Ref.: #37763]

Culture medium composition

expand / minimize

[Ref.: #7879]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7879]

Culture medium growth

[Ref.: #7879]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7879]

Culture medium composition

expand / minimize

[Ref.: #123426]

Culture medium

CIP Medium 112

[Ref.: #123426]

Culture medium growth

[Ref.: #123426]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7879]	growth	28 °C
[Ref.: #31828]	growth	10-42 °C
[Ref.: #31828]	optimum	30 °C
[Ref.: #37763]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #7879]	Temperature range	mesophilic
[Ref.: #31828]	Temperature range	mesophilic
[Ref.: #37763]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31828]			optimum	7.1
[Ref.: #31828]			growth	5.1-10.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31828]	Oxygen tolerance	aerobe
[Ref.: #123426]	Oxygen tolerance	obligate aerobe

[Ref.: #31828]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31828]		NaCl		growth	0-5	%
[Ref.: #31828]		NaCl		optimum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31828]	acetate ChEBI	+	carbon source
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31828]	cellobiose ChEBI	+	carbon source
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31828]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31828]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31828]	galactose ChEBI	+	carbon source
[Ref.: #31828]	gelatin ChEBI	+	carbon source
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31828]	glucose ChEBI	+	carbon source
[Ref.: #31828]	glycerol ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31828]	lactose ChEBI	+	carbon source
[Ref.: #31828]	malate ChEBI	+	carbon source
[Ref.: #31828]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31828]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #123426]	nitrate ChEBI	-	reduction
[Ref.: #123426]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31828]	ribose ChEBI	+	carbon source
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31828]	succinate ChEBI	+	carbon source
[Ref.: #31828]	sucrose ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31828]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #123426]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #31828]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #31828]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31828]	catalase	+	1.11.1.6
[Ref.: #123426]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #31828]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123426]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123426]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123426]	11590	not determinedn.d.	+	-	-	+	+	+	-	-	-	+	+	+	+	-	-	-	-	+	-	+/-	-	+	+	+	+	+	+	+	+/-	-	+	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123426]	11946	-	+	+	+	-	-	-	-	-	+	+	+	-	-	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7879]	Sample type/isolated from	dried seaweed
[Ref.: #7879]	Country	Republic of Korea
[Ref.: #7879]	Country ISO 3 Code	KOR
[Ref.: #7879]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Dried seaweed from Samyang beach
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #123426]	Sample type/isolated from	Dried seaweed
[Ref.: #123426]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #123426]	Country	Republic of Korea
[Ref.: #123426]	Country ISO 3 Code	KOR
[Ref.: #123426]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Algae	-
#Engineered	#Food production	-
#Condition	#Xerophilic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ411541 (>99% sequence identity) for Aeromicrobium tamlense from Microbeatlas

Aquatic Samples	26
Soil Samples	40
Animal Samples	73
Plant Samples	4
Total Samples	143

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7879]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123426]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7879]	Aeromicrobium tamlense strain SSW1-57 16S ribosomal RNA gene, partial sequence	DQ411541	1406	ENA	375541 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aeromicrobium tamlense DSM 19087	GCA_013408555	contig	GenBank	375541 tax ID
[Ref.: #66792]	Aeromicrobium tamlense strain DSM 19087	375541.3	wgs	PATRIC	375541 tax ID	*
[Ref.: #66792]	Aeromicrobium tamlense DSM 19087	2833982808	draft	JGI IMG/M	375541 tax ID	*

[Ref.: #7879]	GC-content	72.7 mol%
[Ref.: #67770]	GC-content	72.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aeromicrobium tamlense strain DSM 19087 PATRIC: 375541.4
[Ref.: #69481]	spore-forming	no	89	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aeromicrobium tamlense strain DSM 19087 PATRIC: 375541.3
[Ref.: #69480]	gram-positive	yes	89.348	yes
[Ref.: #69480]	anaerobic	no	98.619	yes
[Ref.: #69480]	halophile	no	92.8	no
[Ref.: #69480]	spore-forming	no	88.666	no
[Ref.: #69480]	glucose-util	yes	89.628	no
[Ref.: #69480]	aerobic	yes	92.289	no
[Ref.: #69480]	motile	no	96.957	no
[Ref.: #69480]	flagellated	no	98.758	yes
[Ref.: #69480]	thermophile	no	99.225	yes
[Ref.: #69480]	glucose-ferment	no	85.243	no

Availability in culture collections External links

[Ref.: #7879]

Culture collection no.

DSM 19087, JCM 13811, NRRL B-24466, CIP 109549

[Ref.: #80312]

SI-ID 297115

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aeromicrobium flavum sp. nov., isolated from air.	Tang Y, Zhou G, Zhang L, Mao J, Luo X, Wang M, Fang C	Int J Syst Evol Microbiol	10.1099/ijs.0.65443-0	2008	*
Phylogeny	Aeromicrobium tamlense sp. nov., isolated from dried seaweed.	Lee SD, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64442-0	2007	*

References

#7879

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19087

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31828

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28094 (see below)

#37763 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80312

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297115.1 )

#123426 Collection of Institut Pasteur ; Curators of the CIP; CIP 109549

#28094

IJSEM 337 2007 ( DOI 10.1099/ijs.0.64442-0 , PubMed 17267975 )

* These data were automatically processed and therefore are not curated

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Aeromicrobium tamlense strain DSM 19087

Aeromicrobium tamlense strain DSM 19087

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Change proposal