Name: Aeromicrobium flavum TYLN1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11064

Type strain:

Species: Aeromicrobium flavum

Strain Designation: TYLN1, TYLNI

Culture col. no.: DSM 19355, CCTCC AB 206046, JCM 16538, NBRC 107625, CIP 110459

Strain history: CIP <- 2012, CCTCC <- Wuhan Univ., Wuhan, China: strain TYLNI

NCBI tax ID(s): 416568 (species)

SI-ID 396815

DSM 19355

Special Collections

Section

Aeromicrobium flavum TYLN1 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from air.

Gram-positive
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Aeromicrobium*
	Species	**Aeromicrobium flavum**
	Full Scientific Name (LPSN)	Aeromicrobium flavum Tang et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32405]	Gram stain	positive
[Ref.: #119382]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %92.179

[Ref.: #32405]	Cell length	0.3-1.2 µm

[Ref.: #32405]	Cell width	0.2-0.4 µm

[Ref.: #32405]	Cell shape	rod-shaped
[Ref.: #119382]	Cell shape	rod-shaped

[Ref.: #32405]	Motility	no
[Ref.: #119382]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93

[Ref.: #18335]	Colony color	Traffic yellow (1023)
[Ref.: #18335]	Incubation period	10-14 days
[Ref.: #18335]	Cultivation medium used	ISP 2

[Ref.: #18335]	Colony color	Traffic yellow (1023)
[Ref.: #18335]	Incubation period	10-14 days
[Ref.: #18335]	Cultivation medium used	ISP 3

[Ref.: #18335]	Colony color	Traffic yellow (1023)
[Ref.: #18335]	Incubation period	10-14 days
[Ref.: #18335]	Cultivation medium used	ISP 4

[Ref.: #18335]	Colony color	Traffic yellow (1023)
[Ref.: #18335]	Incubation period	10-14 days
[Ref.: #18335]	Cultivation medium used	ISP 5

[Ref.: #18335]	Colony color	Traffic yellow (1023)
[Ref.: #18335]	Incubation period	10-14 days
[Ref.: #18335]	Cultivation medium used	ISP 6

[Ref.: #18335]	Colony color	Traffic yellow (1023)
[Ref.: #18335]	Incubation period	10-14 days
[Ref.: #18335]	Cultivation medium used	ISP 7

[Ref.: #32405]

Pigment production

yes

[Ref.: #18335]	Multicellular complex forming ability	no
[Ref.: #18335]	Medium Name (multicellularity)	ISP 2

[Ref.: #18335]	Multicellular complex forming ability	no
[Ref.: #18335]	Medium Name (multicellularity)	ISP 3

[Ref.: #18335]	Multicellular complex forming ability	no
[Ref.: #18335]	Medium Name (multicellularity)	ISP 4

[Ref.: #18335]	Multicellular complex forming ability	no
[Ref.: #18335]	Medium Name (multicellularity)	ISP 5

[Ref.: #18335]	Multicellular complex forming ability	no
[Ref.: #18335]	Medium Name (multicellularity)	ISP 6

[Ref.: #18335]	Multicellular complex forming ability	no
[Ref.: #18335]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8069]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #8069]

Culture medium growth

[Ref.: #8069]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8069]

Culture medium composition

expand / minimize

[Ref.: #18335]

Culture medium

ISP 2

[Ref.: #18335]

Culture medium growth

[Ref.: #18335]

Culture medium composition

expand / minimize

[Ref.: #18335]

Culture medium

ISP 3

[Ref.: #18335]

Culture medium growth

[Ref.: #18335]

Culture medium composition

expand / minimize

[Ref.: #18335]

Culture medium

ISP 4

[Ref.: #18335]

Culture medium growth

[Ref.: #18335]

Culture medium composition

expand / minimize

[Ref.: #18335]

Culture medium

ISP 5

[Ref.: #18335]

Culture medium growth

[Ref.: #18335]

Culture medium composition

expand / minimize

[Ref.: #18335]

Culture medium

ISP 6

[Ref.: #18335]

Culture medium growth

[Ref.: #18335]

Culture medium composition

expand / minimize

[Ref.: #18335]

Culture medium

ISP 7

[Ref.: #18335]

Culture medium growth

[Ref.: #18335]

Culture medium composition

expand / minimize

[Ref.: #40084]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #40084]

Culture medium growth

[Ref.: #40084]

Culture medium composition

expand / minimize

[Ref.: #119382]

Culture medium

CIP Medium 566

[Ref.: #119382]

Culture medium growth

[Ref.: #119382]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8069]	growth	28 °C
[Ref.: #18335]	optimum	28 °C
[Ref.: #32405]	growth	25-37 °C
[Ref.: #32405]	optimum	30 °C
[Ref.: #40084]	growth	25 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #32405]			optimum	7
[Ref.: #32405]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32405]

Oxygen tolerance

facultative anaerobe

[Ref.: #32405]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32405]		NaCl		growth	01-04	%
[Ref.: #32405]		NaCl		optimum	01-02	%

[Ref.: #32405]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄), MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32405]	acetate ChEBI	+	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32405]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #32405]	fructose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #32405]	glucose ChEBI	+	carbon source
[Ref.: #32405]	glycerol ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32405]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32405]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #32405]	pyruvate ChEBI	+	carbon source
[Ref.: #32405]	ribose ChEBI	+	carbon source
[Ref.: #32405]	sucrose ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #32405]	trehalose ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #32405]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #32405]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #32405]	urease	+	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18335]	27	-	-	+	-	-	-	+	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18335]	45	not determinedn.d.	-	+	+	-	+	-	-	-	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8069]	Sample type/isolated from	air
[Ref.: #8069]	Geographic location (country and/or sea, region)	Wuhan University campus, China
[Ref.: #8069]	Country	China
[Ref.: #8069]	Country ISO 3 Code	CHN
[Ref.: #8069]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Air at the campus of Wuhan Univ.
[Ref.: #67770]	Geographic location (country and/or sea, region)	Wuhan
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #119382]	Sample type/isolated from	Environment, Air sample
[Ref.: #119382]	Geographic location (country and/or sea, region)	Wuhan
[Ref.: #119382]	Country	China
[Ref.: #119382]	Country ISO 3 Code	CHN
[Ref.: #119382]	Continent	Asia
[Ref.: #119382]	Isolation date	2007
* marker position based on {}

Isolation sources categories

#Environmental

#Air

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF133690 (>99% sequence identity) for Aeromicrobium from Microbeatlas

Aquatic Samples	23
Soil Samples	35
Animal Samples	56
Plant Samples	33
Total Samples	147

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18335]	Biosafety level	1	German classification
[Ref.: #8069]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119382]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8069]	Aeromicrobium flavum strain TYLN1 16S ribosomal RNA gene, partial sequence	EF133690	1427	GenBank ENA	416568 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aeromicrobium flavum NBRC 107625	GCA_007992115	contig	GenBank ENA	416568 tax ID	*
[Ref.: #66792]	Aeromicrobium flavum strain NBRC 107625	416568.3	wgs	PATRIC	416568 tax ID	*

[Ref.: #8069]	GC-content	73.3 mol%
[Ref.: #67770]	GC-content	73.3 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aeromicrobium flavum strain NBRC 107625 PATRIC: 416568.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aeromicrobium flavum strain NBRC 107625 PATRIC: 416568.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.179	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.107	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	57.318	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	77.118	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.425	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93	no

Availability in culture collections External links

[Ref.: #8069]

Culture collection no.

DSM 19355, CCTCC AB 206046, JCM 16538, NBRC 107625, CIP 110459

[Ref.: #80313]

SI-ID 396815

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aeromicrobium flavum sp. nov., isolated from air.	Tang Y, Zhou G, Zhang L, Mao J, Luo X, Wang M, Fang C	Int J Syst Evol Microbiol	10.1099/ijs.0.65443-0	2008	*

References

#8069

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19355

#18335

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32405

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28629 (see below)

#40084 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80313

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396815.1 )

#119382 Collection of Institut Pasteur ; Curators of the CIP; CIP 110459

#28629

IJSEM 1860 2008 ( DOI 10.1099/ijs.0.65443-0 , PubMed 18676469 )

* These data were automatically processed and therefore are not curated

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Aeromicrobium flavum strain NBRC 107625

Aeromicrobium flavum strain NBRC 107625

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