Strain identifier
BacDive ID: 11063
Type strain:
Species: Aeromicrobium tamlense
Strain Designation: SSW1-57
Strain history: CIP <- 2007, JCM <- 2006, S. D. Lee, Cheju Nat. Univ., Jeju, Rep. of Korea: strain SSW1-57
NCBI tax ID(s): 375541 (species)
General
@ref: 7879
BacDive-ID: 11063
DSM-Number: 19087
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped
description: Aeromicrobium tamlense SSW1-57 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from dried seaweed.
NCBI tax id
- NCBI tax id: 375541
- Matching level: species
strain history
@ref | history |
---|---|
7879 | <- JCM <- Soon Dong Lee, Se Jae Kim, ssw1-57 |
67770 | S. D. Lee SSW1-57. |
123426 | CIP <- 2007, JCM <- 2006, S. D. Lee, Cheju Nat. Univ., Jeju, Rep. of Korea: strain SSW1-57 |
doi: 10.13145/bacdive11063.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Aeromicrobium
- species: Aeromicrobium tamlense
- full scientific name: Aeromicrobium tamlense Lee and Kim 2007
@ref: 7879
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardioidaceae
genus: Aeromicrobium
species: Aeromicrobium tamlense
full scientific name: Aeromicrobium tamlense Lee and Kim 2007
strain designation: SSW1-57
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
31828 | positive | 2.15 µm | 0.5 µm | rod-shaped | no | |
69480 | no | 96.208 | ||||
69480 | positive | 100 | ||||
123426 | positive | rod-shaped | no |
pigmentation
- @ref: 31828
- production: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
7879 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
37763 | MEDIUM 112 - for Janibacter | yes | Distilled water make up to (1000.000 ml);Magnesium sulphate heptahydrate (1.000 g);Agar (20.000 g);Yeast extract (5.000 g);Peptone (10.000 g);Tween 80 (50.000 mg);Glycerol (2.000 g);Malt extract (5.000 g);Beef extract (2.000 g);Casamino acids (5.000 g);Ca | |
7879 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
123426 | CIP Medium 112 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=112 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7879 | positive | growth | 28 | mesophilic |
31828 | positive | growth | 10-42 | |
31828 | positive | optimum | 30 | mesophilic |
37763 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31828 | positive | growth | 5.1-10.1 | alkaliphile |
31828 | positive | optimum | 7.1 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
31828 | aerobe |
123426 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
31828 | no | |
69480 | no | 99.992 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31828 | NaCl | positive | growth | 0-5 % |
31828 | NaCl | positive | optimum | 2.5 % |
observation
- @ref: 67770
- observation: quinones: MK-9(H4)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31828 | 30089 | acetate | + | carbon source |
31828 | 17057 | cellobiose | + | carbon source |
31828 | 28757 | fructose | + | carbon source |
31828 | 28260 | galactose | + | carbon source |
31828 | 5291 | gelatin | + | carbon source |
31828 | 17234 | glucose | + | carbon source |
31828 | 17754 | glycerol | + | carbon source |
31828 | 17716 | lactose | + | carbon source |
31828 | 25115 | malate | + | carbon source |
31828 | 17306 | maltose | + | carbon source |
31828 | 37684 | mannose | + | carbon source |
31828 | 33942 | ribose | + | carbon source |
31828 | 30031 | succinate | + | carbon source |
31828 | 17992 | sucrose | + | carbon source |
31828 | 27082 | trehalose | + | carbon source |
31828 | 4853 | esculin | + | hydrolysis |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | + | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 28066 | gentiobiose | + | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | + | builds acid from |
68371 | 17992 | sucrose | + | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | + | builds acid from |
68371 | 17814 | salicin | + | builds acid from |
68371 | 4853 | esculin | + | builds acid from |
68371 | 18305 | arbutin | + | builds acid from |
68371 | 27613 | amygdalin | + | builds acid from |
68371 | 59640 | N-acetylglucosamine | + | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | + | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | + | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | + | builds acid from |
68371 | 16988 | D-ribose | + | builds acid from |
68371 | 30849 | L-arabinose | + | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | + | builds acid from |
123426 | 17632 | nitrate | - | reduction |
123426 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 123426
- Chebi-ID: 35581
- metabolite: indole
- production: yes
enzymes
@ref | value | activity | ec |
---|---|---|---|
31828 | acid phosphatase | + | 3.1.3.2 |
31828 | alkaline phosphatase | + | 3.1.3.1 |
31828 | catalase | + | 1.11.1.6 |
31828 | gelatinase | + | |
123426 | oxidase | - | |
123426 | catalase | + | 1.11.1.6 |
123426 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123426 | - | + | + | + | - | - | - | - | - | + | + | + | - | - | - | - | + | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123426 | + | - | - | + | + | + | - | - | - | + | + | + | + | - | - | - | - | + | - | +/- | - | + | + | + | + | + | + | + | +/- | - | + | + | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | geographic location |
---|---|---|---|---|---|
7879 | dried seaweed | Republic of Korea | KOR | Asia | |
67770 | Dried seaweed from Samyang beach | Republic of Korea | KOR | Asia | Jeju Island |
123426 | Dried seaweed | Republic of Korea | KOR | Asia | Jeju Island |
isolation source categories
Cat1 | Cat2 |
---|---|
#Host | #Algae |
#Engineered | #Food production |
#Condition | #Xerophilic |
taxonmaps
- @ref: 69479
- File name: preview.99_16210.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_1793;97_2595;98_3218;99_16210&stattab=map
- Last taxonomy: Aeromicrobium tamlense
- 16S sequence: DQ411541
- Sequence Identity:
- Total samples: 143
- soil counts: 40
- aquatic counts: 26
- animal counts: 73
- plant counts: 4
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
7879 | 1 | Risk group (German classification) |
123426 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 7879
- description: Aeromicrobium tamlense strain SSW1-57 16S ribosomal RNA gene, partial sequence
- accession: DQ411541
- length: 1406
- database: ena
- NCBI tax ID: 375541
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Aeromicrobium tamlense strain DSM 19087 | 375541.3 | wgs | patric | 375541 |
66792 | Aeromicrobium tamlense DSM 19087 | 2833982808 | draft | img | 375541 |
67770 | Aeromicrobium tamlense DSM 19087 | GCA_013408555 | contig | ncbi | 375541 |
GC content
@ref | GC-content | method |
---|---|---|
7879 | 72.7 | |
67770 | 72.7 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 89 | no |
gram-positive | yes | 89.348 | yes |
anaerobic | no | 98.619 | yes |
halophile | no | 92.8 | no |
spore-forming | no | 88.666 | no |
glucose-util | yes | 89.628 | no |
aerobic | yes | 92.289 | no |
motile | no | 96.957 | no |
flagellated | no | 98.758 | yes |
thermophile | no | 99.225 | yes |
glucose-ferment | no | 85.243 | no |
External links
@ref: 7879
culture collection no.: DSM 19087, JCM 13811, NRRL B-24466, CIP 109549
straininfo link
- @ref: 80312
- straininfo: 297115
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 17267975 | Aeromicrobium tamlense sp. nov., isolated from dried seaweed. | Lee SD, Kim SJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.64442-0 | 2007 | Actinomycetales/*classification/cytology/*isolation & purification/physiology, Bacterial Typing Techniques, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis/chemistry, Genes, rRNA, Korea, Molecular Sequence Data, Movement, Peptidoglycan/chemistry, Phospholipids/analysis/chemistry, Phylogeny, Quinones/analysis/chemistry, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seaweed/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid | Genetics |
Phylogeny | 18676469 | Aeromicrobium flavum sp. nov., isolated from air. | Tang Y, Zhou G, Zhang L, Mao J, Luo X, Wang M, Fang C | Int J Syst Evol Microbiol | 10.1099/ijs.0.65443-0 | 2008 | Actinomycetales/*classification/genetics/isolation & purification/physiology, *Air Microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Genetics |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
7879 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19087) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19087 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
31828 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28094 | 28776041 | |
37763 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7305 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
80312 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297115.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123426 | Curators of the CIP | Collection of Institut Pasteur (CIP 109549) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109549 |