Name: Aeromicrobium ginsengisoli DSM 22238
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11062

Type strain:

Species: Aeromicrobium ginsengisoli

Culture col. no.: DSM 22238, JCM 14732, KCTC 19207, GBS 39, Gsoil 098

Strain history: <- MK Kim, Kyunghee Uni.

NCBI tax ID(s): 363867 (species)

SI-ID 291516

LMG 23605, JCM 14732, KCTC 19207

Section

Aeromicrobium ginsengisoli DSM 22238 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil of a ginseng field.

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Aeromicrobium*
	Species	**Aeromicrobium ginsengisoli**
	Full Scientific Name (LPSN)	Aeromicrobium ginsengisoli Kim et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32044]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32044]	Cell length	0.5-1.2 µm

[Ref.: #32044]	Cell width	0.3-0.4 µm

[Ref.: #32044]	Cell shape	coccus-shaped

[Ref.: #32044]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.215

[Ref.: #32044]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16219]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16219]

Culture medium growth

[Ref.: #16219]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16219]

Culture medium composition

expand / minimize

[Ref.: #16219]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #16219]

Culture medium growth

[Ref.: #16219]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16219]

Culture medium composition

expand / minimize

[Ref.: #16219]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #16219]

Culture medium growth

[Ref.: #16219]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16219]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16219]	growth	28 °C
[Ref.: #32044]	growth	04-30 °C
[Ref.: #32044]	optimum	30 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #16219]	Temperature range	mesophilic
[Ref.: #32044]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32044]			optimum	7
[Ref.: #32044]			growth	5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32044]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.983

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32044]		NaCl		growth	03-04	%
[Ref.: #32044]		NaCl		optimum	3	%

[Ref.: #32044]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32044]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #32044]	acetate ChEBI	+	carbon source
[Ref.: #32044]	alanine ChEBI	+	carbon source
[Ref.: #32044]	arabinose ChEBI	+	carbon source
[Ref.: #32044]	asparagine ChEBI	+	carbon source
[Ref.: #32044]	cellobiose ChEBI	+	carbon source
[Ref.: #32044]	D-tryptophan ChEBI	+	carbon source
[Ref.: #32044]	ethanol ChEBI	+	carbon source
[Ref.: #32044]	fructose ChEBI	+	carbon source
[Ref.: #32044]	fucose ChEBI	+	carbon source
[Ref.: #32044]	galactose ChEBI	+	carbon source
[Ref.: #32044]	gluconate ChEBI	+	carbon source
[Ref.: #32044]	glucose ChEBI	+	carbon source
[Ref.: #32044]	glutamate ChEBI	+	carbon source
[Ref.: #32044]	glycerol ChEBI	+	carbon source
[Ref.: #32044]	lactose ChEBI	+	carbon source
[Ref.: #32044]	leucine ChEBI	+	carbon source
[Ref.: #32044]	malate ChEBI	+	carbon source
[Ref.: #32044]	maltose ChEBI	+	carbon source
[Ref.: #32044]	mannose ChEBI	+	carbon source
[Ref.: #32044]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32044]	nitrate ChEBI	+	reduction
[Ref.: #32044]	phenylalanine ChEBI	+	carbon source
[Ref.: #32044]	proline ChEBI	+	carbon source
[Ref.: #32044]	propionate ChEBI	+	carbon source
[Ref.: #32044]	pyruvate ChEBI	+	carbon source
[Ref.: #32044]	rhamnose ChEBI	+	carbon source
[Ref.: #32044]	serine ChEBI	+	carbon source
[Ref.: #32044]	succinate ChEBI	+	carbon source
[Ref.: #32044]	sucrose ChEBI	+	carbon source
[Ref.: #32044]	trehalose ChEBI	+	carbon source
[Ref.: #32044]	valerate ChEBI	+	carbon source
[Ref.: #32044]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32044]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16219]	Sample type/isolated from	soil of a ginseng field
[Ref.: #16219]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #16219]	Country	Republic of Korea
[Ref.: #16219]	Country ISO 3 Code	KOR
[Ref.: #16219]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil of a ginseng field
[Ref.: #67770]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil of ginseng field
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB245394 (>99% sequence identity) for Aeromicrobium from Microbeatlas

Aquatic Samples	148
Soil Samples	1209
Animal Samples	459
Plant Samples	230
Total Samples	2046

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16219]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16219]	Aeromicrobium ginsengisoli gene for 16S rRNA, partial sequence, strain: Gsoil 098	AB245394	1483	ENA	363867 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aeromicrobium ginsengisoli JCM 14732	GCA_004134905	contig	GenBank	363867 tax ID
[Ref.: #66792]	Aeromicrobium ginsengisoli strain JCM 14732	363867.3	wgs	PATRIC	363867 tax ID	*
[Ref.: #66792]	Aeromicrobium ginsengisoli JCM 14732	2866597551	draft	JGI IMG/M	363867 tax ID	*

[Ref.: #16219]	GC-content	66.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32044]	GC-content	66.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aeromicrobium ginsengisoli strain JCM 14732 PATRIC: 363867.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aeromicrobium ginsengisoli strain JCM 14732 PATRIC: 363867.3
[Ref.: #69480]	gram-positive	yes	91.09	no
[Ref.: #69480]	anaerobic	no	99.179	no
[Ref.: #69480]	halophile	no	92.126	no
[Ref.: #69480]	spore-forming	no	90.72	no
[Ref.: #69480]	glucose-util	yes	88.061	yes
[Ref.: #69480]	aerobic	yes	95.543	yes
[Ref.: #69480]	motile	no	94.105	yes
[Ref.: #69480]	flagellated	no	98.362	yes
[Ref.: #69480]	thermophile	no	98.791	yes
[Ref.: #69480]	glucose-ferment	no	88.659	no

Availability in culture collections External links

[Ref.: #16219]

Culture collection no.

DSM 22238, JCM 14732, KCTC 19207, GBS 39, Gsoil 098

[Ref.: #80311]

SI-ID 291516

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aeromicrobium chenweiae sp. nov. and Aeromicrobium yanjiei sp. nov., isolated from Tibetan antelope (Pantholops hodgsonii) and plateau pika (Ochotona curzoniae), respectively.	Li J, Lei W, Yang J, Lu S, Jin D, Lai XH, Zhang S, Cheng Y, Mi F, Huang Y, Pu J, Dong K, Tian Z, Wu X, Huang Y, Wang S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004331	2020	*
Phylogeny	Aeromicrobium panacisoli sp. nov. Isolated from Soil of Ginseng Cultivating Field.	Siddiqi MZ, Lee SY, Choi KD, Im WT	Curr Microbiol	10.1007/s00284-017-1426-4	2017	*
Phylogeny	Aeromicrobium camelliae sp. nov., isolated from Pu'er tea.	Niu L, Xiong M, Tang T, Song L, Hu X, Zhao M, Zhang K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000583	2015	*
Phylogeny	Aeromicrobium halocynthiae sp. nov., a taurocholic acid-producing bacterium isolated from the marine ascidian Halocynthia roretzi.	Kim SH, Yang HO, Sohn YC, Kwon HC	Int J Syst Evol Microbiol	10.1099/ijs.0.016618-0	2010	*
Phylogeny	Aeromicrobium ginsengisoli sp. nov., isolated from a ginseng field.	Kim MK, Park MJ, Im WT, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.64871-0	2008	*

References

#16219

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22238

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32044

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28294 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80311

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID291516.1 )

#28294

IJSEM 2025 2008 ( DOI 10.1099/ijs.0.64871-0 , PubMed 18768598 )

* These data were automatically processed and therefore are not curated

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Aeromicrobium ginsengisoli strain JCM 14732

Aeromicrobium ginsengisoli strain JCM 14732

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