Name: Chromobacterium haemolyticum DSM 19808
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 10452

Type strain:

Species: Chromobacterium haemolyticum

Culture col. no.: DSM 19808, CCUG 53230, JCM 14163, MDA 0585

Strain history: X. Y. Han mDA0585.

NCBI tax ID(s): 1121283 (strain), 394935 (species)

SI-ID 406503

DSM 19808, CCUG 53230

Special Collections

Section

Chromobacterium haemolyticum DSM 19808 is an aerobe, Gram-negative, rod-shaped human pathogen that was isolated from sputum.

Gram-negative
rod-shaped
aerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Chromobacteriaceae*
	Genus	*Chromobacterium*
	Species	**Chromobacterium haemolyticum**
	Full Scientific Name (LPSN)	Chromobacterium haemolyticum Han et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #31938]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.994

[Ref.: #31938]	Cell shape	rod-shaped

[Ref.: #31938]

Pigment production

Multimedia content

[Ref.: #8327]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8327]

Culture medium

REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)

[Ref.: #8327]

Culture medium growth

[Ref.: #8327]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8327]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8327]	growth	37 °C
[Ref.: #59837]	growth	30-37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #59837]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #31938]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #31938]	decanoate ChEBI	+	carbon source
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #31938]	gluconate ChEBI	+	carbon source
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #31938]	glucose ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #31938]	malate ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #31938]	mannitol ChEBI	+	carbon source
[Ref.: #31938]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #31938]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #31938]	catalase	+	1.11.1.6
[Ref.: #31938]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #31938]	gelatinase	+
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #8327]	24482	+	-	+	+	-	-	+	-	+	-	-	+	+	-	+	+	-	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8327]	Sample type/isolated from	sputum
[Ref.: #8327]	Geographic location (country and/or sea, region)	Texas
[Ref.: #8327]	Country	USA
[Ref.: #8327]	Country ISO 3 Code	USA
[Ref.: #8327]	Continent	North America

[Ref.: #59837]	Sample type/isolated from	Human sputum (doubtful clinical significance)
[Ref.: #59837]	Sampling date	2001-06-01
[Ref.: #59837]	Geographic location (country and/or sea, region)	Texas,Houston
[Ref.: #59837]	Country	USA
[Ref.: #59837]	Country ISO 3 Code	USA
[Ref.: #59837]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Sputum culture from a patient
* marker position based on {}

Isolation sources categories

#Host Body Product

#Fluids

#Sputum

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ785104 (>99% sequence identity) for Chromobacterium from Microbeatlas

Aquatic Samples	186
Soil Samples	31
Animal Samples	44
Plant Samples	51
Total Samples	312

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8327]	Pathogenicity (human)	yes, in single cases
[Ref.: #8327]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31938]	Chromobacterium haemolyticum DSM 19808 strain MDA0585 16S ribosomal RNA gene, complete sequence	DQ785104	1500	GenBank ENA	1121283 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Chromobacterium haemolyticum DSM 19808	GCA_000711885	scaffold	GenBank ENA	1121283 tax ID
[Ref.: #66792]	Chromobacterium haemolyticum DSM 19808	1121283.3	wgs	PATRIC	1121283 tax ID	*
[Ref.: #66792]	Chromobacterium haemolyticum DSM 19808	2565956523	draft	JGI IMG/M	1121283 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chromobacterium haemolyticum DSM 19808 PATRIC: 1121283.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.994	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.238	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.133	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	55.459	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.985	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.867	no

Availability in culture collections External links

[Ref.: #8327]

Culture collection no.

DSM 19808, CCUG 53230, JCM 14163, MDA 0585

[Ref.: #79729]

SI-ID 406503

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chromobacterium rhizoryzae sp. nov., isolated from rice roots.	Zhou S, Guo X, Wang H, Kong D, Wang Y, Zhu J, Dong W, He M, Hu G, Zhao B, Zhao B, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001284	2016	*
Enzymology	Chromobacterium spp. harbour Ambler class A beta-lactamases showing high identity with KPC.	Gudeta DD, Bortolaia V, Jayol A, Poirel L, Nordmann P, Guardabassi L	J Antimicrob Chemother	10.1093/jac/dkw020	2016	*
Phylogeny	Chromobacterium haemolyticum sp. nov., a strongly haemolytic species.	Han XY, Han FS, Segal J	Int J Syst Evol Microbiol	10.1099/ijs.0.64681-0	2008	*

References

#8327

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19808

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31938

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28194 (see below)

#59837 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53230

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#79729

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406503.1 )

#28194

IJSEM 1398 2008 ( DOI 10.1099/ijs.0.64681-0 , PubMed 18523185 )

* These data were automatically processed and therefore are not curated

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