Name: Chromobacterium aquaticum CC-SEYA-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 10453

Type strain:

Species: Chromobacterium aquaticum

Strain Designation: CC-SEYA-1

Culture col. no.: DSM 19852, BCRC 17769, CCUG 55175

Strain history: <- P. Kämpfer, Univ. Giessen, Germany <- C.-C. Young, College of Agriculture and Natural Resources, University Taichung; CC-SEYA-1

NCBI tax ID(s): 467180 (species)

SI-ID 399000

DSM 19852, DSM 23297, CCUG 55175

Special Collections

Section

Chromobacterium aquaticum CC-SEYA-1 is an aerobe, Gram-negative, motile bacterium that was isolated from spring water.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Chromobacteriaceae*
	Genus	*Chromobacterium*
	Species	**Chromobacterium aquaticum**
	Full Scientific Name (LPSN)	Chromobacterium aquaticum Young et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32490]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.994

[Ref.: #32490]	Cell length	1.75 µm

[Ref.: #32490]	Cell width	0.4 µm

[Ref.: #32490]	Cell shape	rod-shaped

[Ref.: #32490]	Motility	yes

[Ref.: #60487]

Incubation period

1-2 days

[Ref.: #32490]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8355]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #8355]

Culture medium growth

[Ref.: #8355]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8355]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8355]	growth	28 °C
[Ref.: #32490]	optimum	32 °C
[Ref.: #60487]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #32490]			optimum	6
[Ref.: #32490]			growth	5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32490]	Oxygen tolerance	aerobe
[Ref.: #60487]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32490]		NaCl		growth	0-3.5	%
[Ref.: #32490]		NaCl		optimum	0.05	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32490]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #32490]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #32490]	acetate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #32490]	alanine ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #32490]	asparagine ChEBI	+	carbon source
[Ref.: #32490]	aspartate ChEBI	+	carbon source
[Ref.: #32490]	cellobiose ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #32490]	dextrin ChEBI	+	carbon source
[Ref.: #32490]	DL-carnitine ChEBI	+	carbon source
[Ref.: #32490]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #32490]	ethanolamine ChEBI	+	carbon source
[Ref.: #32490]	formate ChEBI	+	carbon source
[Ref.: #32490]	fructose ChEBI	+	carbon source
[Ref.: #32490]	galacturonate ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #32490]	gluconate ChEBI	+	carbon source
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #32490]	glucose ChEBI	+	carbon source
[Ref.: #32490]	glutamate ChEBI	+	carbon source
[Ref.: #32490]	glycogen ChEBI	+	carbon source
[Ref.: #32490]	histidine ChEBI	+	carbon source
[Ref.: #32490]	inosine ChEBI	+	carbon source
[Ref.: #32490]	itaconate ChEBI	+	carbon source
[Ref.: #32490]	L-alaninamide ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #32490]	lactate ChEBI	+	carbon source
[Ref.: #32490]	leucine ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #32490]	mannose ChEBI	+	carbon source
[Ref.: #32490]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #32490]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #32490]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #32490]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #32490]	ornithine ChEBI	+	carbon source
[Ref.: #32490]	phenylalanine ChEBI	+	carbon source
[Ref.: #32490]	phenylethylamine ChEBI	+	carbon source
[Ref.: #32490]	proline ChEBI	+	carbon source
[Ref.: #32490]	propionate ChEBI	+	carbon source
[Ref.: #32490]	serine ChEBI	+	carbon source
[Ref.: #32490]	succinate ChEBI	+	carbon source
[Ref.: #32490]	threonine ChEBI	+	carbon source
[Ref.: #32490]	thymidine ChEBI	+	carbon source
[Ref.: #32490]	trehalose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #32490]	tween 40 ChEBI	+	carbon source
[Ref.: #32490]	tween 80 ChEBI	+	carbon source
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #32490]	uridine ChEBI	+	carbon source
[Ref.: #32490]	urocanic acid ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #32490]	acid phosphatase	+	3.1.3.2
[Ref.: #32490]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #32490]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #32490]	gelatinase	+
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #8355]	24307	+	-	+	+	-	-	+	-	+	-	-	-	+	-	+	+	-	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8355]	Sample type/isolated from	spring water
[Ref.: #8355]	Country	Taiwan, Province of China
[Ref.: #8355]	Country ISO 3 Code	TWN
[Ref.: #8355]	Continent	Asia

[Ref.: #60487]	Sample type/isolated from	Spring water
[Ref.: #60487]	Geographic location (country and/or sea, region)	Taipei County,Yang-Ming Mountain
[Ref.: #60487]	Country	Taiwan, Province of China
[Ref.: #60487]	Country ISO 3 Code	TWN
[Ref.: #60487]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Spring

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU109734 (>99% sequence identity) for Chromobacterium from Microbeatlas

Aquatic Samples	118
Soil Samples	15
Animal Samples	41
Plant Samples	61
Total Samples	235

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8355]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8355]	Chromobacterium aquaticum strain CC-SEYA-1 16S ribosomal RNA gene, partial sequence	EU109734	1476	GenBank ENA	467180 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chromobacterium aquaticum DSM 19852	GCA_021129195	scaffold	GenBank ENA	467180 tax ID	*

[Ref.: #32490]

GC-content

62.31 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chromobacterium aquaticum DSM 19852 NCBI: GCA_021129195.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.994	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.366	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	62.969	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.156	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.143	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	75.737	no

Availability in culture collections External links

[Ref.: #8355]

Culture collection no.

DSM 19852, BCRC 17769, CCUG 55175

[Ref.: #79730]

SI-ID 399000

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Chromobacterium aquaticum CC-SEYA-1, a Nonpigmented Member of the Genus Chromobacterium.	Soby SD	Genome Announc	10.1128/genomeA.01661-16	2017	*
Phylogeny	Chromobacterium rhizoryzae sp. nov., isolated from rice roots.	Zhou S, Guo X, Wang H, Kong D, Wang Y, Zhu J, Dong W, He M, Hu G, Zhao B, Zhao B, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001284	2016	*
Phylogeny	Chromobacterium aquaticum sp. nov., isolated from spring water samples.	Young CC, Arun AB, Lai WA, Chen WM, Chou JH, Shen FT, Rekha PD, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.65573-0	2008	*
	Identification of N-acyl-l-homoserine lactones produced by non-pigmented Chromobacterium aquaticum CC-SEYA-1(T) and pigmented Chromobacterium subtsugae PRAA4-1(T).	Rekha PD, Young CC, Arun AB	3 Biotech	10.1007/s13205-011-0029-1	2011	*

References

#8355

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19852

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32490

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28710 (see below)

#60487 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55175

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#79730

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399000.1 )

#28710

IJSEM 877 2008 ( DOI 10.1099/ijs.0.65573-0 , PubMed 18398186 )

* These data were automatically processed and therefore are not curated

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Chromobacterium aquaticum DSM 19852

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