Aquaspirillum serpens | Type strain | DSM 68, ATCC 12638, CCUG 2092, NCTC 10593, LMG 3734, NRRL B-2045, CIP 63.19, JCM 20995, IAM 13944, IFO 14924, NBRC 14924, NCIMB 8658, NRRL: B-2045 | BacDiveID:10435

Strain identifier

BacDive ID: 10435

Type strain:

Species: Aquaspirillum serpens

Culture col. no.: DSM 68, ATCC 12638, CCUG 2092, NCTC 10593, LMG 3734, NRRL B-2045, CIP 63.19, JCM 20995, IAM 13944, IFO 14924, NBRC 14924, NCIMB 8658, NRRL: B-2045

Strain history: CIP <- 1963, NCIB <- M.A. Williams: strain Giesberger, Spirillum serpens subsp. serpens

NCBI tax ID(s): 1121004 (strain), 190 (species)

SI-ID 13575

LMG 3734, ATCC 12638, CCUG 2092, NCIMB 8658, NCTC 10593, NRRL B-2045, NCIB 8658, DSM 68, IFO 14924, IAM 13944, IAM 14966, NBRC 14924, JCM 20995, CIP 63.19

Special Collections

Other strains from Aquaspirillum serpens

Section

Aquaspirillum serpens DSM 68 is an aerobe, Gram-negative bacterium that was isolated from Fresh water.

Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Chromobacteriaceae*
	Genus	*Aquaspirillum*
	Species	**Aquaspirillum serpens**
	Full Scientific Name (LPSN)	Aquaspirillum serpens (Müller 1786) Hylemon et al. 1973 (Approved Lists 1980)

Synonym

"Vibrio serpens"

Information on morphological and physiological properties Morphology

[Ref.: #122572]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.212

[Ref.: #122572]	Cell shape	rod-shaped

[Ref.: #122572]	Motility	yes

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

MEDIUM 14 - Williams and Rittenberg medium for Aquaspirillum genus

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

SPIRILLUM MEDIUM (DSMZ Medium 37)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

[Ref.: #122572]

Culture medium

CIP Medium 14

[Ref.: #122572]

Culture medium growth

[Ref.: #122572]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #2049]			growth	30 °C
[Ref.: #37610]			growth	25 °C
[Ref.: #44485]			growth	25-33 °C
[Ref.: #67770]			growth	30 °C
[Ref.: #122572]			growth	15-41 °C
[Ref.: #122572]		no	growth	5 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44485]	Oxygen tolerance	aerobe
[Ref.: #44485]	Oxygen tolerance	microaerophile

Ability of spore formation

no Confidence in %91.462

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #122572]		NaCl		growth	0	%
[Ref.: #122572]		NaCl	no	growth	2	%
[Ref.: #122572]		NaCl	no	growth	4	%
[Ref.: #122572]		NaCl	no	growth	6	%
[Ref.: #122572]		NaCl	no	growth	8	%
[Ref.: #122572]		NaCl	no	growth	10	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]		adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68371]		amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]		arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68371]		cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122572]		citrate ChEBI	-	carbon source
[Ref.: #68371]		D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]		D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68371]		D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]		D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68371]		D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]		D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68371]		D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]		D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68371]		D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]		decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68371]		erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122572]		esculin ChEBI	-	hydrolysis
[Ref.: #68371]		esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]		esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68371]		galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]		gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68371]		gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]		gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68371]		gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122572]		glucose ChEBI	-	fermentation
[Ref.: #68371]		glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]		L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68371]		L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122572]		lactose ChEBI	-	fermentation
[Ref.: #68371]		lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]		malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]		maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68371]		maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]		N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68371]		N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122572]		nitrate ChEBI	-	reduction
[Ref.: #68369]		nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #122572]		nitrite ChEBI	-	reduction
[Ref.: #68371]		Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122572]		sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68371]		starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]		tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68371]		turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68369]		urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68371]		xylitol ChEBI	-	builds acid from	* from API 50CH acid
		Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122572]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #122572]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #122572]		acetoin ChEBI	-
[Ref.: #122572]		glucose ChEBI		-
[Ref.: #68369]		indole ChEBI			-	* from API 20NE

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68382]		acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122572]		alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]		alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]		alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]		alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]		alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122572]		amylase	-
[Ref.: #68369]		arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #122572]		beta-galactosidase	-	3.2.1.23
[Ref.: #68382]		beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]		beta-glucosidase	-	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]		beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122572]		caseinase	-	3.4.21.50
[Ref.: #122572]		catalase	+	1.11.1.6
[Ref.: #68382]		cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]		cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #122572]		DNase	-
[Ref.: #68382]		esterase (C 4)	+		* from API zym
[Ref.: #68382]		esterase lipase (C 8)	+		* from API zym
[Ref.: #122572]		gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #122572]		gelatinase	-
[Ref.: #68369]		gelatinase	-		* from API 20NE
[Ref.: #122572]		lecithinase	-
[Ref.: #68382]		leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122572]		lipase	-
[Ref.: #68382]		lipase (C 14)	-		* from API zym
[Ref.: #122572]		lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]		N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]		naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122572]		ornithine decarboxylase	-	4.1.1.17
[Ref.: #122572]		oxidase	+
[Ref.: #122572]		phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #122572]		protease	-
[Ref.: #68382]		trypsin	-	3.4.21.4	* from API zym
[Ref.: #122572]		tryptophan deaminase	-
[Ref.: #122572]		tween esterase	-
[Ref.: #122572]		urease	-	3.5.1.5
[Ref.: #68369]		urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]		valine arylamidase	-		* from API zym
		Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

Fatty acid	Percentage	ECL
C16:1 ω7c	38.3	15.819
C18:1 ω7c /12t/9t	21.9	17.824
C16:0	19.1	16
C18:0	7.5	18
C12:0 3OH	6.5	13.455
C12:0	4.4	12
C17:0	2.4	17

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #44485]	7381	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	+

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #122572]	12019	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122572]	3188	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122572]	13033	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44485]	Sample type/isolated from	Fresh water

[Ref.: #67770]	Sample type/isolated from	Freshwater

[Ref.: #122572]	Sample type/isolated from	Environment, Fresh water
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Freshwater

What are isolation sources categories?

Global distribution of 16S sequence AB074518 (>99% sequence identity) for Aquaspirillum serpens subclade from Microbeatlas

Aquatic Samples	9687
Soil Samples	408
Animal Samples	1624
Plant Samples	108
Total Samples	11827

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2049]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122572]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2049]	Aquaspirillum serpens gene for 16S rRNA, partial sequence	AB074518	1491	GenBank ENA	190 tax ID
[Ref.: #124043]	Aquaspirillum serpens gene for 16S rRNA, partial sequence, strain: NBRC 14924.	AB680710	1461	GenBank ENA	190 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aquaspirillum serpens DSM 68	GCA_000420525	contig	GenBank ENA	1121004 tax ID

GC-content

50 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aquaspirillum serpens DSM 68 DSM 68 NCBI: GCA_000420525.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.212	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	87.503	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	67.206	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.462	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	90.278	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	74.589	no

Availability in culture collections External links

Culture collection no.

DSM 68, ATCC 12638, CCUG 2092, NCTC 10593, LMG 3734, NRRL B-2045, CIP 63.19, JCM 20995, IAM 13944, IFO 14924, NBRC 14924, NCIMB 8658, NRRL: B-2045

SI-ID 13575

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aquaspirillum soli sp. nov., isolated from a soil sample.	Moya G, Trinh H, Yan ZF, Won KH, Yang JE, Wang QJ, Kook MC, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001802	2017	*
Phylogeny	Paludibacterium yongneupense gen. nov., sp. nov., isolated from a wetland, Yongneup, in Korea.	Kwon SW, Kim BY, Kim WG, Yoo KH, Yoo SH, Son JA, Weon HY	Int J Syst Evol Microbiol	10.1099/ijs.0.64831-0	2008	*
Phylogeny	Reclassification of Aquaspirillum itersonii and Aquaspirillum peregrinum as Novispirillum itersonii gen. nov., comb. nov. and Insolitispirillum peregrinum gen. nov., comb. nov.	Yoon JH, Kang SJ, Park S, Lee SY, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.65340-0	2007	*

References

#2049

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 68

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37610 ; Curators of the CIP;
#44485 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 2092

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#79716

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13575.1 )

#122572 Collection of Institut Pasteur ; Curators of the CIP; CIP 63.19

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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