Alysiella filiformis (IAM 14895, DSM 16848, ATCC 15532)

Name: Alysiella filiformis (IAM 14895, DSM 16848, ATCC 15532)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10434

Type strain

Strain Designation A1

Culture col. no. IAM 14895 DSM 16848 ATCC 15532 CCUG 3710 CIP 103342 4 more

NCBI tax ID(s) 1120981 194196

Special Collections DSMZ CCUG JCM CIP

History <- CIP <- NCTC <- P. D. M. Steed; A1 IAM 14895 <-- NCTC 10282 <-- P. D. M. Steed strain A1. CIP <- 1989, NCTC <- 1962, P.D.M. Steed: strain A1

Links

Alysiella filiformis A1 is a microaerophile, mesophilic prokaryote that was isolated from sheep saliva.

microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 884

LMG 6455,ATCC 15532,CCUG 3710,NCTC 10282,CIP 103342,DSM 16848,IAM 14895,NBRC 102454,JCM 21385

@ref 20215

Last LPSN update 2026-02-09 11:20:16

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Neisseriales

Family Neisseriaceae

Genus Alysiella

Species Alysiella filiformis

Full scientific name Alysiella filiformis (Schmid 1922) Langeron 1923 (Approved Lists 1980)

Synonyms (2)

"Caryophanon filiformis"
"Simonsiella filiformis"

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	94.4
125438	negative	98.554

Multimedia

@ref:	6632
multimedia content:	DSM_16848.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_16848.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_16848_1.jpg
multimedia.multimedia content:	EM_DSM_16848_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_16848_2.jpg
multimedia.multimedia content:	EM_DSM_16848_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_16848_3.jpg
multimedia.multimedia content:	EM_DSM_16848_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_16848_4.jpg
multimedia.multimedia content:	EM_DSM_16848_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_16848_5.jpg
multimedia.multimedia content:	EM_DSM_16848_5.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
36852	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
6632	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
6632	TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)	Medium recipe at MediaDive	Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
6632	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
119347	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6632	positive	growth	37	mesophilic
36852	positive	growth	37	mesophilic
44680	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
44680	microaerophile
125439	obligate aerobe	97.9

Spore formation

@ref	Spore formation	Confidence
125439		99.5
125438		92.683

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68377	15824 ChEBI	D-fructose	-	builds acid from	from API NH
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68377	17306 ChEBI	maltose	-	builds acid from	from API NH
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68377	17992 ChEBI	sucrose	+	builds acid from	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68377	16199 ChEBI	urea	-	hydrolysis	from API NH

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH

Enzymes

@ref	Value	Activity	Ec
68377	alkaline phosphatase	+	3.1.3.1	from API NH
68377	beta-galactosidase	-	3.2.1.23	from API NH
68377	beta-lactamase	-	3.5.2.6	from API NH
68377	gamma-glutamyltransferase	-	2.3.2.2	from API NH
68377	lipase	-		from API NH
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
68377	proline-arylamidase	-	3.4.11.5	from API NH
68377	tryptophan deaminase	-	4.1.99.1	from API NH
68377	urease	-	3.5.1.5	from API NH

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	formaldehyde oxidation	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	threonine metabolism	100	10 of 10
66794	coenzyme A metabolism	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	teichoic acid biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ceramide biosynthesis	100	1 of 1
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	propanol degradation	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	pentose phosphate pathway	81.82	9 of 11
66794	methylglyoxal degradation	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	heme metabolism	78.57	11 of 14
66794	valine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycogen biosynthesis	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	phenylalanine metabolism	69.23	9 of 13
66794	octane oxidation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	serine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	vitamin B6 metabolism	63.64	7 of 11
66794	proline metabolism	63.64	7 of 11
66794	degradation of sugar alcohols	62.5	10 of 16
66794	ketogluconate metabolism	62.5	5 of 8
66794	purine metabolism	61.7	58 of 94
66794	leucine metabolism	61.54	8 of 13
66794	methionine metabolism	61.54	16 of 26
66794	NAD metabolism	61.11	11 of 18
66794	glutamate and glutamine metabolism	60.71	17 of 28
66794	glycogen metabolism	60	3 of 5
66794	pyrimidine metabolism	60	27 of 45
66794	propionate fermentation	60	6 of 10
66794	alanine metabolism	58.62	17 of 29
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	tyrosine metabolism	57.14	8 of 14
66794	cysteine metabolism	55.56	10 of 18
66794	d-mannose degradation	55.56	5 of 9
66794	urea cycle	53.85	7 of 13
66794	non-pathway related	52.63	20 of 38
66794	histidine metabolism	51.72	15 of 29
66794	oxidative phosphorylation	51.65	47 of 91
66794	suberin monomers biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	glutathione metabolism	50	7 of 14
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	adipate degradation	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	butanoate fermentation	50	2 of 4
66794	tryptophan metabolism	47.37	18 of 38
66794	sulfate reduction	46.15	6 of 13
66794	arginine metabolism	45.83	11 of 24
66794	lysine metabolism	45.24	19 of 42
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	starch degradation	40	4 of 10
66794	gallate degradation	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	lipid metabolism	38.71	12 of 31
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	degradation of sugar acids	36	9 of 25
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	arachidonic acid metabolism	33.33	6 of 18
66794	pantothenate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	degradation of hexoses	33.33	6 of 18
66794	IAA biosynthesis	33.33	1 of 3
66794	degradation of pentoses	32.14	9 of 28
66794	ascorbate metabolism	31.82	7 of 22
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	polyamine pathway	30.43	7 of 23
66794	glycine metabolism	30	3 of 10
66794	metabolism of disaccharids	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	phenol degradation	25	5 of 20
66794	vitamin E metabolism	25	1 of 4

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
6632	-	+	-	-	+	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Caprinae (Sheep/Goat)
#Host Body Product	#Oral cavity and Airways	#Saliva

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
6632	sheep saliva	Australia	AUS	Australia and Oceania
44680	Sheep saliva
67770	Sheep saliva
119347	Animal, Sheep, saliva

Taxonmaps

69479

Global distribution of 16S sequence AB087263 (>99% sequence identity) for Alysiella filiformis from Microbeatlas

Aquatic Samples	32
Soil Samples	4
Animal Samples	866
Plant Samples	2
Total Samples	904

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6632	1	Risk group (German classification) According to TRBA 466
119347	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2016229v1 assembly for Alysiella filiformis DSM 16848	complete	GCA_020162295	1120981.14	8063215320	1120981	98.73
66792	Alysiella filiformis DSM 16848	complete		1120981.16		1120981	98.24
66792	Alysiella filiformis DSM 16848	complete		1120981.15		1120981	98.24
66792	ASM1405452v1 assembly for Alysiella filiformis DSM 16848	complete	GCA_014054525	194196.9	8063217871	194196	98.23
67770	IMG-taxon 2574179727 annotated assembly for Alysiella filiformis DSM 16848	scaffold	GCA_900230205	1120981.3	2574179727	1120981	65.87

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Alysiella filiformis gene for 16S rRNA, strain: IAM 14968	AB087262	1473	194196
20218	Alysiella filiformis ATCC 15532 16S ribosomal RNA gene, complete sequence	AF487710	1511	194196
20218	Alysiella filiformis gene for 16S rRNA, partial sequence, strain: NBRC 102454	AB681796	1464	194196
20218	Alysiella filiformis gene for 16S rRNA, strain: IAM 14895	AB087263	1490	194196

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alysiella filiformis DSM 16848
NCBI: GCA_020162295

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.90	no
125439	gram_stain	BacteriaNetⓘ	negative	94.40	no
125439	motility	BacteriaNetⓘ	no	71.80	no
125439	spore_formation	BacteriaNetⓘ	no	99.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alysiella filiformis DSM 16848 DSM 16848
NCBI: GCA_020162295.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.55	no
125438	anaerobic	anaerobicⓘ	no	93.56	no
125438	aerobic	aerobicⓘ	no	56.02	yes
125438	spore-forming	spore-formingⓘ	no	92.68	no
125438	thermophilic	thermophileⓘ	no	98.46	no
125438	flagellated	motile2+ⓘ	no	82.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Phylogenomic analysis of the understudied Neisseriaceae species reveals a poly- and paraphyletic Kingella genus.	Morreale DP, St Geme Iii JW, Planet PJ.	Microbiol Spectr	10.1128/spectrum.03123-23	2023
	Evolution of longitudinal division in multicellular bacteria of the Neisseriaceae family.	Nyongesa S, Weber PM, Bernet E, Pulido F, Nieves C, Nieckarz M, Delaby M, Viehboeck T, Krause N, Rivera-Millot A, Nakamura A, Vischer NOE, vanNieuwenhze M, Brun YV, Cava F, Bulgheresi S, Veyrier FJ.	Nat Commun	10.1038/s41467-022-32260-w	2022
Phylogeny	Paralysiella testudinis gen. nov., sp. nov., isolated from the cloaca of a toad-headed turtle (Mesoclemmys nasuta).	Busse HJ, Kampfer P, Szostak MP, Ruckert C, Spergser J	Int J Syst Evol Microbiol	10.1099/ijsem.0.005114	2021

References

#6632	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16848
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#36852	; Curators of the CIP;
#44680	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 3710
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68377	Automatically annotated from API NH .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119347	Collection of Institut Pasteur ; Curators of the CIP; CIP 103342
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alysiella filiformis (IAM 14895, DSM 16848, ATCC 15532)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API NH

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_020162295

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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