Name: Marinomonas dokdonensis DSW10-10
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11273

Type strain:

Species: Marinomonas dokdonensis

Strain Designation: DSW10-10

Culture col. no.: DSM 17202, KCTC 12394

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 328224 (species)

SI-ID 281454

DSM 17202, KCTC 12394

Special Collections

Section

Marinomonas dokdonensis DSW10-10 is an aerobe, Gram-negative, motile bacterium that was isolated from sea water.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Marinomonas*
	Species	**Marinomonas dokdonensis**
	Full Scientific Name (LPSN)	Marinomonas dokdonensis Yoon et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31571]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31571]	Cell shape	rod-shaped

[Ref.: #31571]	Motility	yes

[Ref.: #31571]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6812]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6812]

Culture medium growth

[Ref.: #6812]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6812]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6812]	growth	30 °C
[Ref.: #31571]	growth	04-37 °C
[Ref.: #31571]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31571]			optimum	7.5
[Ref.: #31571]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31571]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31571]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31571]		NaCl		growth	01-10	%
[Ref.: #31571]		NaCl		optimum	2.5	%

[Ref.: #31571]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31571]	cellobiose ChEBI	+	carbon source
[Ref.: #31571]	citrate ChEBI	+	carbon source
[Ref.: #31571]	fructose ChEBI	+	carbon source
[Ref.: #31571]	glucose ChEBI	+	carbon source
[Ref.: #31571]	malate ChEBI	+	carbon source
[Ref.: #31571]	maltose ChEBI	+	carbon source
[Ref.: #31571]	mannitol ChEBI	+	carbon source
[Ref.: #31571]	mannose ChEBI	+	carbon source
[Ref.: #31571]	myo-inositol ChEBI	+	carbon source
[Ref.: #31571]	pyruvate ChEBI	+	carbon source
[Ref.: #31571]	ribose ChEBI	+	carbon source
[Ref.: #31571]	sorbitol ChEBI	+	carbon source
[Ref.: #31571]	succinate ChEBI	+	carbon source
[Ref.: #31571]	sucrose ChEBI	+	carbon source
[Ref.: #31571]	trehalose ChEBI	+	carbon source
[Ref.: #31571]	tween 20 ChEBI	+	carbon source
[Ref.: #31571]	tween 40 ChEBI	+	carbon source
[Ref.: #31571]	tween 60 ChEBI	+	carbon source
[Ref.: #31571]	tween 80 ChEBI	+	carbon source
[Ref.: #31571]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31571]		catalase	+	1.11.1.6
[Ref.: #31571]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6812]	Sample type/isolated from	sea water
[Ref.: #6812]	Geographic location (country and/or sea, region)	Dokdo
[Ref.: #6812]	Country	Republic of Korea
[Ref.: #6812]	Country ISO 3 Code	KOR
[Ref.: #6812]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Dokdo
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6812]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6812]	Marinomonas dokdonensis strain DSW10-10 16S ribosomal RNA gene, partial sequence	DQ011526	1495	GenBank ENA	328224 tax ID

[Ref.: #6812]	GC-content	45.3-45.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31571]	GC-content	45.5 mol%

Availability in culture collections External links

[Ref.: #6812]

Culture collection no.

DSM 17202, KCTC 12394

[Ref.: #80506]

SI-ID 281454

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinomonas epiphytica sp. nov., isolated from a marine intertidal macroalga.	Ojha AK, Verma A, Pal Y, Bhatt D, Mayilraj S, Krishnamurthi S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002014	2017	*
Phylogeny	Marinomonas mangrovi sp. nov., isolated from mangrove sediment.	Zhang DC, Margesin R	Int J Syst Evol Microbiol	10.1099/ijs.0.000136	2015	*
Phylogeny	Marinomonas dokdonensis sp. nov., isolated from sea water.	Yoon JH, Kang SJ, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63830-0	2005	*

References

#6812

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17202

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31571

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27860 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#80506

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID281454.1 )

#27860

IJSEM 2303 2005 ( DOI 10.1099/ijs.0.63830-0 , PubMed 16280487 )

* These data were automatically processed and therefore are not curated

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