Name: Marinomonas polaris CK13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11272

Type strain:

Species: Marinomonas polaris

Strain Designation: CK13

Culture col. no.: DSM 16579, JCM 12522, MTCC 6645, CGMCC 1.6484, CIP 109165

Strain history: S. Shivaji CK13.

NCBI tax ID(s): 1122206 (strain), 293552 (species)

SI-ID 289980

DSM 16579, JCM 12522, CIP 109165

Section

Marinomonas polaris CK13 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from coastal sea water.

Gram-negative
motile
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Marinomonas*
	Species	**Marinomonas polaris**
	Full Scientific Name (LPSN)	Marinomonas polaris Gupta et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31624]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.945

[Ref.: #31624]	Cell length	2-3.2 µm

[Ref.: #31624]	Cell width	0.6-0.8 µm

[Ref.: #31624]	Cell shape	rod-shaped

[Ref.: #31624]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.652

[Ref.: #31624]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6513]

Culture medium

LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)

[Ref.: #6513]

Culture medium growth

[Ref.: #6513]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6513]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6513]	growth	22 °C
[Ref.: #31624]	growth	04-37 °C
[Ref.: #31624]	optimum	30 °C
[Ref.: #67770]	growth	22 °C

[Ref.: #6513]	Temperature range	psychrophilic
[Ref.: #31624]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #31624]			optimum	7
[Ref.: #31624]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31624]

Oxygen tolerance

aerobe

[Ref.: #31624]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31624]		NaCl		growth	0-11	%
[Ref.: #31624]		NaCl		optimum	5	%

[Ref.: #31624]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31624]	acetate ChEBI	+	carbon source
[Ref.: #31624]	arginine ChEBI	+	carbon source
[Ref.: #31624]	asparagine ChEBI	+	carbon source
[Ref.: #31624]	cellobiose ChEBI	+	carbon source
[Ref.: #31624]	dextrin ChEBI	+	carbon source
[Ref.: #31624]	fructose ChEBI	+	carbon source
[Ref.: #31624]	galactose ChEBI	+	carbon source
[Ref.: #31624]	gluconate ChEBI	+	carbon source
[Ref.: #31624]	glucose ChEBI	+	carbon source
[Ref.: #31624]	glycerol ChEBI	+	carbon source
[Ref.: #31624]	glycine ChEBI	+	carbon source
[Ref.: #31624]	histidine ChEBI	+	carbon source
[Ref.: #31624]	lactose ChEBI	+	carbon source
[Ref.: #31624]	maltose ChEBI	+	carbon source
[Ref.: #31624]	mannose ChEBI	+	carbon source
[Ref.: #31624]	ribitol ChEBI	+	carbon source
[Ref.: #31624]	ribose ChEBI	+	carbon source
[Ref.: #31624]	sorbitol ChEBI	+	carbon source
[Ref.: #31624]	sucrose ChEBI	+	carbon source
[Ref.: #31624]	threonine ChEBI	+	carbon source
[Ref.: #31624]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31624]	acid phosphatase	+	3.1.3.2
[Ref.: #31624]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31624]	catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6513]	Sample type/isolated from	coastal sea water
[Ref.: #6513]	Geographic location (country and/or sea, region)	Kerguelen Island

[Ref.: #67770]	Sample type/isolated from	Coastal seawater collected from the subantarctic Kerguelen Island
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ833000 (>99% sequence identity) for Marinomonas polaris subclade from Microbeatlas

Aquatic Samples	1130
Soil Samples	51
Animal Samples	166
Plant Samples	21
Total Samples	1368

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6513]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6513]	Marinomonas sp. CK13 partial 16S rRNA gene	AJ833000	1475	ENA	293552 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Marinomonas polaris DSM 16579	GCA_900129155	scaffold	GenBank	1122206 tax ID
[Ref.: #66792]	Marinomonas polaris DSM 16579	1122206.4	wgs	PATRIC	1122206 tax ID	*
[Ref.: #66792]	Marinomonas polaris DSM 16579	2582581270	draft	JGI IMG/M	1122206 tax ID	*

[Ref.: #31624]

GC-content

41.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marinomonas polaris DSM 16579 DSM 16579 NCBI: GCA_900129155.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinomonas polaris DSM 16579 PATRIC: 1122206.4
[Ref.: #69480]	motile	yes	93.217	yes
[Ref.: #69480]	flagellated	yes	93.684	no
[Ref.: #69480]	gram-positive	no	98.237	yes
[Ref.: #69480]	anaerobic	no	97.361	no
[Ref.: #69480]	halophile	yes	76.303	no
[Ref.: #69480]	spore-forming	no	94.185	yes
[Ref.: #69480]	thermophile	no	99.732	yes
[Ref.: #69480]	glucose-util	yes	90.055	no
[Ref.: #69480]	aerobic	yes	90.936	yes
[Ref.: #69480]	glucose-ferment	no	79.246	no

Availability in culture collections External links

[Ref.: #6513]

Culture collection no.

DSM 16579, JCM 12522, MTCC 6645, CGMCC 1.6484, CIP 109165

[Ref.: #80505]

SI-ID 289980

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinomonas polaris sp. nov., a psychrohalotolerant strain isolated from coastal sea water off the subantarctic Kerguelen islands.	Gupta P, Chaturvedi P, Pradhan S, Delille D, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.63921-0	2006	*

References

#6513

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16579

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31624

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27910 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80505

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID289980.1 )

#27910

IJSEM 361 2006 ( DOI 10.1099/ijs.0.63921-0 , PubMed 16449440 )

* These data were automatically processed and therefore are not curated

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Marinomonas polaris DSM 16579 DSM 16579

Marinomonas polaris DSM 16579

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