Name: Marinomonas pontica 46-16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11274

Type strain:

Species: Marinomonas pontica

Strain Designation: 46-16

Culture col. no.: DSM 17793, KMM 3492, LMG 22531, UCM 11075

Strain history: <- E. P. Ivanova, Swinburne Univ. of Techn., Hawthorn, Australia; 46-16 <- O. M. Onyshchenko, IMV

NCBI tax ID(s): 264739 (species)

SI-ID 132303

LMG 22531, DSM 17793

Section

Marinomonas pontica 46-16 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea-water.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Oceanospirillaceae*
	Genus	*Marinomonas*
	Species	**Marinomonas pontica**
	Full Scientific Name (LPSN)	Marinomonas pontica Ivanova et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31328]	Gram stain	negative

[Ref.: #31328]	Cell length	1.2 µm

[Ref.: #31328]	Cell width	0.5 µm

[Ref.: #31328]	Cell shape	rod-shaped

[Ref.: #31328]	Motility	yes

[Ref.: #31328]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7188]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7188]

Culture medium growth

[Ref.: #7188]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7188]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7188]	growth	28 °C
[Ref.: #31328]	growth	4.0-33 °C
[Ref.: #31328]	optimum	22.5 °C

[Ref.: #7188]	Temperature range	mesophilic
[Ref.: #31328]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #31328]			optimum	7
[Ref.: #31328]			growth	6.0-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31328]

Oxygen tolerance

aerobe

[Ref.: #31328]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31328]		NaCl		growth	0.5-10	%
[Ref.: #31328]		NaCl		optimum	5.25	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31328]	acetate ChEBI	+	carbon source
[Ref.: #31328]	alanine ChEBI	+	carbon source
[Ref.: #31328]	arginine ChEBI	+	carbon source
[Ref.: #31328]	asparagine ChEBI	+	carbon source
[Ref.: #31328]	cellobiose ChEBI	+	carbon source
[Ref.: #31328]	citrate ChEBI	+	carbon source
[Ref.: #31328]	dextrin ChEBI	+	carbon source
[Ref.: #31328]	ethanol ChEBI	+	carbon source
[Ref.: #31328]	formate ChEBI	+	carbon source
[Ref.: #31328]	fructose ChEBI	+	carbon source
[Ref.: #31328]	glucose ChEBI	+	carbon source
[Ref.: #31328]	glutamate ChEBI	+	carbon source
[Ref.: #31328]	glycogen ChEBI	+	carbon source
[Ref.: #31328]	histidine ChEBI	+	carbon source
[Ref.: #31328]	lactate ChEBI	+	carbon source
[Ref.: #31328]	lactose ChEBI	+	carbon source
[Ref.: #31328]	malate ChEBI	+	carbon source
[Ref.: #31328]	maltose ChEBI	+	carbon source
[Ref.: #31328]	mannitol ChEBI	+	carbon source
[Ref.: #31328]	ornithine ChEBI	+	carbon source
[Ref.: #31328]	phenylalanine ChEBI	+	carbon source
[Ref.: #31328]	proline ChEBI	+	carbon source
[Ref.: #31328]	propionate ChEBI	+	carbon source
[Ref.: #31328]	pyruvate ChEBI	+	carbon source
[Ref.: #31328]	rhamnose ChEBI	+	carbon source
[Ref.: #31328]	ribose ChEBI	+	carbon source
[Ref.: #31328]	serine ChEBI	+	carbon source
[Ref.: #31328]	sucrose ChEBI	+	carbon source
[Ref.: #31328]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31328]		catalase	+	1.11.1.6
[Ref.: #31328]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7188]	Sample type/isolated from	sea-water
[Ref.: #7188]	Geographic location (country and/or sea, region)	Karadag Natural Reserve of the Eastern Crimea, Black Sea
[Ref.: #7188]	Country	Ukraine
[Ref.: #7188]	Country ISO 3 Code	UKR
[Ref.: #7188]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY539835 (>99% sequence identity) for Marinomonas from Microbeatlas

Aquatic Samples	158
Soil Samples	4
Animal Samples	4
Plant Samples	2
Total Samples	168

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7188]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7188]	Marinomonas pontica strain 46-16 16S ribosomal RNA gene, complete sequence	AY539835	1535	ENA	264739 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinomonas pontica LMG 22531	GCA_026191375	contig	GenBank	264739 tax ID	*

[Ref.: #7188]

GC-content

46.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinomonas pontica LMG 22531 NCBI: GCA_026191375.1
[Ref.: #69480]	motile	yes	94.055	no
[Ref.: #69480]	flagellated	yes	92.512	no
[Ref.: #69480]	gram-positive	no	98.488	yes
[Ref.: #69480]	anaerobic	no	96.282	yes
[Ref.: #69480]	aerobic	yes	88.801	yes
[Ref.: #69480]	halophile	yes	86.353	yes
[Ref.: #69480]	spore-forming	no	96.139	yes
[Ref.: #69480]	glucose-ferment	no	81.387	no
[Ref.: #69480]	thermophile	no	99.306	no
[Ref.: #69480]	glucose-util	yes	90.898	yes

Availability in culture collections External links

[Ref.: #7188]

Culture collection no.

DSM 17793, KMM 3492, LMG 22531, UCM 11075

[Ref.: #80507]

SI-ID 132303

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinomonas lutimaris sp. nov., isolated from a tidal flat sediment of the East China Sea.	Gao Y, Wei Y, Wang P	Int J Syst Evol Microbiol	10.1099/ijsem.0.005368	2022	*
Phylogeny	Marinomonas alcarazii sp. nov., M. rhizomae sp. nov., M. foliarum sp. nov., M. posidonica sp. nov. and M. aquiplantarum sp. nov., isolated from the microbiota of the seagrass Posidonia oceanica.	Lucas-Elio P, Marco-Noales E, Espinosa E, Ordax M, Lopez MM, Garcias-Bonet N, Marba N, Duarte CM, Sanchez-Amat A	Int J Syst Evol Microbiol	10.1099/ijs.0.027227-0	2010	*
Phylogeny	Marinomonas pontica sp. nov., isolated from the Black Sea.	Ivanova EP, Onyshchenko OM, Christen R, Lysenko AM, Zhukova NV, Shevchenko LS, Kiprianova EA	Int J Syst Evol Microbiol	10.1099/ijs.0.63326-0	2005	*

References

#7188

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17793

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31328

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27642 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#80507

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID132303.1 )

#27642

IJSEM 275 2005 ( DOI 10.1099/ijs.0.63326-0 , PubMed 15653887 )

* These data were automatically processed and therefore are not curated

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Marinomonas pontica LMG 22531

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