Marinomonas pontica (DSM 17793, KMM 3492, LMG 22531)

Name: Marinomonas pontica (DSM 17793, KMM 3492, LMG 22531)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11274

Type strain

Strain Designation 46-16

Culture col. no. DSM 17793 KMM 3492 LMG 22531 UCM 11075 46-16

NCBI tax ID(s) 264739

Special Collections DSMZ Literature strains

Links

Marinomonas pontica 46-16 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from sea-water.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 132303

LMG 22531,DSM 17793

@ref 20215

Last LPSN update 2025-12-16 09:49:32

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Oceanospirillaceae

Genus Marinomonas

Species Marinomonas pontica

Full scientific name Marinomonas pontica Ivanova et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
31328	negative	1.2 µm	0.5 µm	rod-shaped
125438	negative					99.481

Pigmentation

31328

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7188	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7188	positive	growth	28	mesophilic
31328	positive	growth	4.0-33
31328	positive	optimum	22.5	psychrophilic

Culture pH

@ref	Ability	Type	PH	PH range
31328	positive	optimum	7
31328	positive	growth	6.0-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

31328

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
31328
125438		92.781

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31328	NaCl	positive	growth	0.5-10 %
31328	NaCl	positive	optimum	5.25 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31328	30089 ChEBI	acetate	+	carbon source
31328	16449 ChEBI	alanine	+	carbon source
31328	29016 ChEBI	arginine	+	carbon source
31328	22653 ChEBI	asparagine	+	carbon source
31328	17057 ChEBI	cellobiose	+	carbon source
31328	16947 ChEBI	citrate	+	carbon source
31328	23652 ChEBI	dextrin	+	carbon source
31328	16236 ChEBI	ethanol	+	carbon source
31328	15740 ChEBI	formate	+	carbon source
31328	28757 ChEBI	fructose	+	carbon source
31328	17234 ChEBI	glucose	+	carbon source
31328	29987 ChEBI	glutamate	+	carbon source
31328	28087 ChEBI	glycogen	+	carbon source
31328	27570 ChEBI	histidine	+	carbon source
31328	24996 ChEBI	lactate	+	carbon source
31328	17716 ChEBI	lactose	+	carbon source
31328	25115 ChEBI	malate	+	carbon source
31328	17306 ChEBI	maltose	+	carbon source
31328	29864 ChEBI	mannitol	+	carbon source
31328	18257 ChEBI	ornithine	+	carbon source
31328	28044 ChEBI	phenylalanine	+	carbon source
31328	26271 ChEBI	proline	+	carbon source
31328	17272 ChEBI	propionate	+	carbon source
31328	15361 ChEBI	pyruvate	+	carbon source
31328	26546 ChEBI	rhamnose	+	carbon source
31328	33942 ChEBI	ribose	+	carbon source
31328	17822 ChEBI	serine	+	carbon source
31328	17992 ChEBI	sucrose	+	carbon source
31328	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31328	catalase	+	1.11.1.6
31328	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7188	sea-water	Karadag Natural Reserve of the Eastern Crimea, Black Sea	Ukraine	UKR	Europe

Taxonmaps

69479

Global distribution of 16S sequence AY539835 (>99% sequence identity) for Marinomonas from Microbeatlas

Aquatic Samples	158
Soil Samples	4
Animal Samples	4
Plant Samples	2
Total Samples	168

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7188	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2619137v1 assembly for Marinomonas pontica LMG 22531	contig	GCA_026191375	264739.3	8048696962	264739	58.2

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7188	Marinomonas pontica strain 46-16 16S ribosomal RNA gene, complete sequence	AY539835	1535		264739

GC content

7188

GC-content (mol%)46.5

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinomonas pontica LMG 22531
NCBI: GCA_026191375.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.48	no
125438	anaerobic	anaerobicⓘ	no	96.76	yes
125438	aerobic	aerobicⓘ	yes	77.57	no
125438	spore-forming	spore-formingⓘ	no	92.78	yes
125438	thermophilic	thermophileⓘ	no	97.36	no
125438	flagellated	motile2+ⓘ	yes	81.08	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of Bacterial Microbiota of P.D.O. Feta Cheese by 16S Metagenomic Analysis.	Papadakis P, Konteles S, Batrinou A, Ouzounis S, Tsironi T, Halvatsiotis P, Tsakali E, Van Impe JFM, Vougiouklaki D, Strati IF, Houhoula D.	Microorganisms	10.3390/microorganisms9112377	2021
Metabolism	Individual Apostichopus japonicus fecal microbiome reveals a link with polyhydroxybutyrate producers in host growth gaps.	Yamazaki Y, Meirelles PM, Mino S, Suda W, Oshima K, Hattori M, Thompson FL, Sakai Y, Sawabe T, Sawabe T.	Sci Rep	10.1038/srep21631	2016
Phylogeny	Marinomonas hwangdonensis sp. nov., isolated from seawater.	Jung YT, Oh TK, Yoon JH.	Int J Syst Evol Microbiol	10.1099/ijs.0.036582-0	2012
Phylogeny	Taxonomic study of Marinomonas strains isolated from the seagrass Posidonia oceanica, with descriptions of Marinomonas balearica sp. nov. and Marinomonas pollencensis sp. nov.	Espinosa E, Marco-Noales E, Gomez D, Lucas-Elio P, Ordax M, Garcias-Bonet N, Duarte CM, Sanchez-Amat A.	Int J Syst Evol Microbiol	10.1099/ijs.0.008607-0	2010
Phylogeny	Marinomonas polaris sp. nov., a psychrohalotolerant strain isolated from coastal sea water off the subantarctic Kerguelen islands.	Gupta P, Chaturvedi P, Pradhan S, Delille D, Shivaji S.	Int J Syst Evol Microbiol	10.1099/ijs.0.63921-0	2006
Phylogeny	Marinomonas lutimaris sp. nov., isolated from a tidal flat sediment of the East China Sea.	Gao Y, Wei Y, Wang P	Int J Syst Evol Microbiol	10.1099/ijsem.0.005368	2022
Phylogeny	Marinomonas alcarazii sp. nov., M. rhizomae sp. nov., M. foliarum sp. nov., M. posidonica sp. nov. and M. aquiplantarum sp. nov., isolated from the microbiota of the seagrass Posidonia oceanica.	Lucas-Elio P, Marco-Noales E, Espinosa E, Ordax M, Lopez MM, Garcias-Bonet N, Marba N, Duarte CM, Sanchez-Amat A	Int J Syst Evol Microbiol	10.1099/ijs.0.027227-0	2010
Phylogeny	Marinomonas pontica sp. nov., isolated from the Black Sea.	Ivanova EP, Onyshchenko OM, Christen R, Lysenko AM, Zhukova NV, Shevchenko LS, Kiprianova EA	Int J Syst Evol Microbiol	10.1099/ijs.0.63326-0	2005

References

#7188	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17793
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27642	IJSEM 275 2005 ( DOI 10.1099/ijs.0.63326-0 , PubMed 15653887 )
#31328	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27642
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Marinomonas pontica (DSM 17793, KMM 3492, LMG 22531)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_026191375

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media