Strain identifier

BacDive ID: 11273

Type strain: Yes

Species: Marinomonas dokdonensis

Strain Designation: DSW10-10

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 328224 (species)

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General

@ref: 6812

BacDive-ID: 11273

DSM-Number: 17202

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Marinomonas dokdonensis DSW10-10 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea water.

NCBI tax id

  • NCBI tax id: 328224
  • Matching level: species

strain history

@refhistory
6812<- J.-H. Yoon; DSW10-10
67771<- JH Yoon, KRIBB

doi: 10.13145/bacdive11273.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Oceanospirillaceae
  • genus: Marinomonas
  • species: Marinomonas dokdonensis
  • full scientific name: Marinomonas dokdonensis Yoon et al. 2005

@ref: 6812

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Oceanospirillaceae

genus: Marinomonas

species: Marinomonas dokdonensis

full scientific name: Marinomonas dokdonensis Yoon et al. 2005

strain designation: DSW10-10

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotility
31571negativerod-shapedyes
67771negative

pigmentation

  • @ref: 31571
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 6812
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6812positivegrowth30mesophilic
31571positivegrowth04-37
31571positiveoptimum30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
31571positivegrowth05-08
31571positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31571aerobe
67771aerobe

spore formation

  • @ref: 31571
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31571NaClpositivegrowth01-10 %
31571NaClpositiveoptimum2.5 %

observation

  • @ref: 31571
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3157117057cellobiose+carbon source
3157116947citrate+carbon source
3157128757fructose+carbon source
3157117234glucose+carbon source
3157125115malate+carbon source
3157117306maltose+carbon source
3157129864mannitol+carbon source
3157137684mannose+carbon source
3157117268myo-inositol+carbon source
3157115361pyruvate+carbon source
3157133942ribose+carbon source
3157130911sorbitol+carbon source
3157130031succinate+carbon source
3157117992sucrose+carbon source
3157127082trehalose+carbon source
3157153424tween 20+carbon source
3157153423tween 40+carbon source
3157153425tween 60+carbon source
3157153426tween 80+carbon source
3157118222xylose+carbon source

enzymes

@refvalueactivityec
31571catalase+1.11.1.6
31571cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6812sea waterDokdoRepublic of KoreaKORAsia
67771From seawaterDokdoRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

  • @ref: 6812
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6812
  • description: Marinomonas dokdonensis strain DSW10-10 16S ribosomal RNA gene, partial sequence
  • accession: DQ011526
  • length: 1495
  • database: ena
  • NCBI tax ID: 328224

GC content

@refGC-contentmethod
681245.3-45.7high performance liquid chromatography (HPLC)
3157145.5

External links

@ref: 6812

culture collection no.: DSM 17202, KCTC 12394

straininfo link

  • @ref: 80506
  • straininfo: 281454

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16280487Marinomonas dokdonensis sp. nov., isolated from sea water.Yoon JH, Kang SJ, Oh TKInt J Syst Evol Microbiol10.1099/ijs.0.63830-02005Base Composition, DNA, Bacterial/analysis/chemistry/genetics, DNA, Ribosomal/analysis/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Oceanospirillaceae/classification/cytology/*isolation & purification/physiology, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, Seawater/*microbiology, Sodium Chloride/*metabolismGenetics
Phylogeny25713041Marinomonas mangrovi sp. nov., isolated from mangrove sediment.Zhang DC, Margesin RInt J Syst Evol Microbiol10.1099/ijs.0.0001362015Avicennia/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Marinomonas/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryGenetics
Phylogeny28771118Marinomonas epiphytica sp. nov., isolated from a marine intertidal macroalga.Ojha AK, Verma A, Pal Y, Bhatt D, Mayilraj S, Krishnamurthi SInt J Syst Evol Microbiol10.1099/ijsem.0.0020142017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Marinomonas/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seaweed/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6812Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17202)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17202
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31571Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2786028776041
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
80506Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID281454.1StrainInfo: A central database for resolving microbial strain identifiers