Mycobacterium parafortuitum 16002 is an obligate aerobe, mesophilic, rod-shaped prokaryote that was isolated from soil.
rod-shaped obligate aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Mycobacteriaceae |
| Genus Mycobacterium |
| Species Mycobacterium parafortuitum |
| Full scientific name Mycobacterium parafortuitum Tsukamura 1966 (Approved Lists 1980) |
| Synonyms (1) |
| BacDive ID | Other strains from Mycobacterium parafortuitum (1) | Type strain |
|---|---|---|
| 8360 | M. parafortuitum DSM 43526, SN 1601 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 11116 | GYM+S MEDIUM (DSMZ Medium 214) | Medium recipe at MediaDive | Name: GYM+S MEDIUM (DSMZ Medium 214) Composition: Starch 20.0 g/l Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 11116 | BHI MEDIUM WITH ADDITIONAL GLUCOSE (DSMZ Medium 215b) | Medium recipe at MediaDive | Name: BHI MEDIUM WITH ADDITIONAL GLUCOSE (DSMZ Medium 215b) Composition: Brain heart infusion 37.0 g/l Glucose 5.0 g/l Distilled water | ||
| 11116 | LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) | Medium recipe at MediaDive | Name: LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354) Composition: Potato flour 18.6104 g/l L-Asparagin 2.23325 g/l KH2PO4 1.55087 g/l Mg-citrate 0.372208 g/l Malachite green 0.248139 g/l MgSO4 0.148883 g/l Glycerol Fresh egg mixture Distilled water | ||
| 38649 | MEDIUM 112 - for Janibacter | Distilled water make up to (1000.000 ml);Magnesium sulphate heptahydrate (1.000 g);Agar (20.000 g);Yeast extract (5.000 g);Peptone (10.000 g);Tween 80 (50.000 mg);Glycerol (2.000 g);Malt extract (5.000 g);Beef extract (2.000 g);Casamino acids (5.000 g);Ca | |||
| 121556 | CIP Medium 112 | Medium recipe at CIP |
| 67770 | Observationquinones: MK-9(H2) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | + | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | - | assimilation | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | + | assimilation | from API 20NE |
| 121556 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68369 | 30849 ChEBI | L-arabinose | + | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | + | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 121556 | 17632 ChEBI | nitrate | - | reduction | |
| 121556 | 17632 ChEBI | nitrate | - | respiration | |
| 68369 | 17632 ChEBI | nitrate | + | reduction | from API 20NE |
| 121556 | 16301 ChEBI | nitrite | - | reduction | |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | + | hydrolysis | from API 20NE |
| @ref | Metabolite | Is antibiotic | Is sensitive | Is resistant | |
|---|---|---|---|---|---|
| 121556 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 121556 | amylase | - | ||
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 121556 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 121556 | caseinase | - | 3.4.21.50 | |
| 121556 | catalase | + | 1.11.1.6 | |
| 121556 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 121556 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 121556 | gelatinase | - | ||
| 68369 | gelatinase | + | from API 20NE | |
| 121556 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 121556 | lipase | - | ||
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 121556 | oxidase | - | ||
| 121556 | protease | - | ||
| 121556 | tween esterase | - | ||
| 121556 | urease | + | 3.5.1.5 | |
| 68369 | urease | + | 3.5.1.5 | from API 20NE |
| Metadata FA analysis | ||||||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | |||||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | |||||||||||||||||||||||||||||||||||||||||||||
| @ref | 65606 | |||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||
| @ref | Control | Alkaline phosphatase | Esterase (C 4) | 2-naphtyl caprylateEsterase Lipase (C 8) | Lipase (C 14) | L-leucyl-2-naphthylamideLeucine arylamidase | L-valyl-2-naphthylamideValine arylamidase | L-cystyl-2-naphthylamideCystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121556 | - | + | + | + | + | + | + | + | + | - | + | + | - | - | - | + | - | - | - | - | |
| 11116 | - | + | + | + | - | + | - | +/- | - | - | + | +/- | - | - | - | +/- | - | - | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM1072548v1 assembly for Mycolicibacterium parafortuitum JCM 6367 | complete | 39692 | 99.01 | ||||
| 66792 | Mycobacterium parafortuitum strain CCUG 20999 | contig | 39692 | 62.4 | ||||
| 67770 | ASM208681v1 assembly for Mycolicibacterium parafortuitum CCUG 20999 | contig | 39692 | 62.26 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 56.40 | no |
| 125439 | motility | BacteriaNetⓘ | no | 79.30 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 98.40 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 99.10 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 92.34 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.38 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 88.61 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 54.81 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.00 | no |
| 125438 | flagellated | motile2+ⓘ | no | 87.87 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
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| In Vitro Activity of the Sudapyridine (WX-081) against Non-Tuberculous Mycobacteria Isolated in Beijing, China. | Zhu R, Shang Y, Chen S, Xiao H, Ren R, Wang F, Xue Y, Li L, Li Y, Chu N, Huang H. | Microbiol Spectr | 10.1128/spectrum.01372-22 | 2022 | ||
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| In vitro and intracellular inhibitory activities of nosiheptide against Mycobacterium abscessus. | Zhu R, Yu X, Zhang T, Kong Y, Wang F, Jia J, Xue Y, Huang H. | Front Microbiol | 10.3389/fmicb.2022.926361 | 2022 | ||
| Metabolism | Optimization of a nanotechnology based antimicrobial platform for food safety applications using Engineered Water Nanostructures (EWNS). | Pyrgiotakis G, Vedantam P, Cirenza C, McDevitt J, Eleftheriadou M, Leonard SS, Demokritou P. | Sci Rep | 10.1038/srep21073 | 2016 | |
| Pathogenicity | In Vitro Activities of Bedaquiline and Delamanid against Nontuberculous Mycobacteria Isolated in Beijing, China. | Yu X, Gao X, Li C, Luo J, Wen S, Zhang T, Ma Y, Dong L, Wang F, Huang H. | Antimicrob Agents Chemother | 10.1128/aac.00031-19 | 2019 | |
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| Draft Genome Sequence of Mycobacterium parafortuitum Strain P7335. | Saad J, Levasseur A, Drancourt M. | Microbiol Resour Announc | 10.1128/mra.00950-18 | 2018 | ||
| Genetics | Whole genome sequence data of Mycolicibacterium parafortuitum Panama NTM 1 from a dairy farm in Panama. | Ku JE, Llanes A, Guizado-Batista F, Hernandez-Ricord E, Ramirez-Casanova A, Mislov-Vallarino P, Prescilla-Ledezma A, Torrales N, Acosta F, Goodridge A, Ortiz de Moreno N. | Data Brief | 10.1016/j.dib.2025.111368 | 2025 | |
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| An Assessment of the Efficacy of Commercial Air Ionizer Systems Against a SARS-CoV-2 Surrogate. | Vaze N, Gold B, Lindsey D, Moore MD, Koutrakis P, Demokritou P. | Microorganisms | 10.3390/microorganisms13030593 | 2025 | ||
| A case report of cutaneous infection with Mycobacterium neoaurum. | Mohebbipour-Loren A, Soghrati M, Barin S, Rezaei M. | Clin Case Rep | 10.1002/ccr3.7265 | 2023 | ||
| Rapid and accurate identification and differentiation of Mycobacterium tuberculosis and non-tuberculous mycobacteria using PCR kits available in a high-burden setting. | Castro-Rodriguez B, Franco-Sotomayor G, Rodriguez-Pazmino AS, Cardenas-Franco GE, Orlando SA, Hermoso de Mendoza J, Parra-Vera H, Garcia-Bereguiain MA. | Front Public Health | 10.3389/fpubh.2024.1358261 | 2024 | ||
| Evidence of Mycobacterium bovis DNA in shared water sources at livestock-wildlife-human interfaces in KwaZulu-Natal, South Africa. | Matthews MC, Cooke DM, Kerr TJ, Loxton AG, Warren RM, Ghielmetti G, Streicher EM, Witte CS, Miller MA, Goosen WJ. | Front Vet Sci | 10.3389/fvets.2025.1483162 | 2025 | ||
| Identification of different subtypes of rapid growing Atypical Mycobacterium from water and soil sources: Using PCR-RFLP using hsp65 and rRNA 16s-23s genes. | Varahram M, Farnia P, Saif S, Marashian M, Farnia P, Ghanavi J, Velayati AA. | Int J Mycobacteriol | 10.1016/j.ijmyco.2016.09.057 | 2016 | ||
| Inactivating SARS-CoV-2 Surrogates on Surfaces Using Engineered Water Nanostructures Incorporated with Nature Derived Antimicrobials. | Vaze N, Soorneedi AR, Moore MD, Demokritou P. | Nanomaterials (Basel) | 10.3390/nano12101735 | 2022 | ||
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| Bacteremia with an Unusual Pathogen: Mycobacterium neoaurum. | Awadh H, Mansour M, Shorman M. | Case Rep Infect Dis | 10.1155/2016/5167874 | 2016 | ||
| Effects of negative air ions (NAIs) on Leishmania major: A novel tool for treatment of zoonotic cutaneous leishmaniasis (ZCL). | Badirzadeh A, Najm M, Hemphill A, Alipour M, Hasanpour H, Masoori L, Karimi P. | PLoS One | 10.1371/journal.pone.0274124 | 2022 | ||
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| Mycobacterium neoaurum infection in a patient with renal failure. | Lai CC, Tan CK, Chen CC, Hsueh PR. | Int J Infect Dis | 10.1016/j.ijid.2008.11.001 | 2009 | ||
| Efficacy of single pass UVC air treatment for the inactivation of coronavirus, MS2 coliphage and Staphylococcus aureus bioaerosols. | Snelling WJ, Afkhami A, Turkington HL, Carlisle C, Cosby SL, Hamilton JWJ, Ternan NG, Dunlop PSM. | J Aerosol Sci | 10.1016/j.jaerosci.2022.106003 | 2022 | ||
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| Lagrangian modeling of inactivation of airborne microorganisms by in-duct ultraviolet lamps. | Yang Y, Zhang H, Lai AC. | Build Environ | 10.1016/j.buildenv.2020.107465 | 2021 | ||
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| UV-induced inactivation rates for airborne Mycobacterium bovis BCG. | Peccia J, Hernandez M. | J Occup Environ Hyg | 10.1080/15459620490458495 | 2004 | ||
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| Molecular Identification of Mycobacterium Species of Public Health and Veterinary Importance from Cattle in the South State of México. | Zaragoza Bastida A, Rivero Perez N, Valladares Carranza B, Isaac-Olive K, Moreno Perez P, Sandoval Trujillo H, Ramirez Duran N. | Can J Infect Dis Med Microbiol | 10.1155/2017/6094587 | 2017 | ||
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| #11116 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43528 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #38649 | ; Curators of the CIP; |
| #65606 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 20999 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68369 | Automatically annotated from API 20NE . |
| #68382 | Automatically annotated from API zym . |
| #121556 | Collection of Institut Pasteur ; Curators of the CIP; CIP 106802 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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