Mycobacterium chlorophenolicum PCP-1 | Type strain | DSM 43826, ATCC 49826, JCM 7439, NCIMB 123325, NRRL B-16528

Strain identifier

BacDive ID: 8364

Type strain:

Species: Mycobacterium chlorophenolicum

Strain Designation: PCP-1

Culture col. no.: DSM 43826, ATCC 49826, JCM 7439, NCIMB 123325, NRRL B-16528

Strain history: <- J.H.A. Apajalahti, Univ. Helsinki, PCP-1

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Mycobacterium chlorophenolicum PCP-1 is a mesophilic bacterium that was isolated from mixed culture that originated from a chlorophenol-contaminated lake sediment sample.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Actinobacteria
	Class	Actinobacteria
	Order	Mycobacteriales
	Family	Mycobacteriaceae
	Genus	Mycobacterium
	Species	Mycobacterium chlorophenolicum
	Full Scientific Name (PNU)	Mycobacterium chlorophenolicum (Apajalahti et al. 1986) Häggblom et al. 1994

	Synonym	Mycolicibacterium chlorophenolicum
	Synonym	Rhodococcus chlorophenolicus

Information on morphological and physiological propertiesMorphology

Multimedia content

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Caption:

Medium 645 28°C

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License/Copyright:

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Intellectual property rights:

Information on culture and growth conditionsCulture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

medium recipe provided by DSMZ

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Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

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Culture medium growth

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Culture medium link

medium recipe provided by DSMZ

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Culture medium

MEDIUM 116 - for Streptomyces, Nocardia, Streptosporangium and Mycobacterium chlorophenolicum

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Culture medium growth

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11297]			growth	28 ̊C
[Ref.: #39745]			growth	30 ̊C

[Ref.: #11297]	Temperature range	mesophilic
[Ref.: #39745]	Temperature range	mesophilic

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #20216]

Observation

Degrades chlorophenols

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #11297]	5239	-	+	+	+	-	+	+/-	+/-	-	-	+	+/-	-	-	-	+	-	-	-	-

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #11297]	15095	-	-	-	-	-	-	-	-	+/-	+/-	-	+	-	-	+	-	+/-	+	-	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

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Sample type/isolated from

mixed culture that originated from a chlorophenol-contaminated lake sediment sample

Isolation sources categories

#Engineered	#Contamination	-
#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

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Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Mycobacterium chlorophenolicum strain CIP 104189 16S ribosomal RNA gene, partial sequence	AF547911	540	ENA	37916 tax ID	*
[Ref.: #20218]	M.chlorophenolicum (DSM 43826) 16S rRNA gene	X79292	1466	ENA	37916 tax ID	*
[Ref.: #20218]	M.chlorophenolicum 16S rRNA gene (NCIMB 12325T)	X81926	1317	ENA	37916 tax ID	*
[Ref.: #20218]	M.chlorophenolicus (PCP-1) 16S rRNA gene	X79094	1532	ENA	37916 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycolicibacterium chlorophenolicum DSM 43826	GCA_001044235	scaffold	GenBank	37916 tax ID
[Ref.: #66792]	Mycolicibacterium chlorophenolicum JCM 7439 = NBRC 15527	GCA_001552315	contig	GenBank	1303685 tax ID
[Ref.: #66792]	Mycolicibacterium chlorophenolicum JCM 7439 = NBRC 15527	GCA_001313545	contig	GenBank	1303685 tax ID
[Ref.: #66792]	Mycobacterium chlorophenolicum JCM 7439 = NBRC 15527	1303685.4	wgs	PATRIC	1303685 tax ID
[Ref.: #66792]	Mycobacterium chlorophenolicum JCM 7439 = NBRC 15527	1303685.5	wgs	PATRIC	1303685 tax ID
[Ref.: #66792]	Mycobacterium chlorophenolicum strain DSM 43826	37916.4	wgs	PATRIC	37916 tax ID

Availability in culture collectionsExternal links

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Culture collection no.

DSM 43826, ATCC 49826, JCM 7439, NCIMB 123325, NRRL B-16528

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Associated Passport(s) in StrainInfo

114888, 114886, 152978, 152980

References

#11297

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43826

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39745 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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