Name: Mycobacterium sp. JC1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8330

Type strain:

Species: Mycobacterium sp.

Strain Designation: JC1

Culture col. no.: DSM 3803

Strain history: <- Y.M. Kim <- J.W. Cho; JC1 (Acinetobacter sp.)

NCBI tax ID(s): 212194 (species)

SI-ID 47761

DSM 3803

Other strains from Mycobacterium sp.

M. sp. FI-09026, DSM 45395 (type strain)
M. sp. Gent 7, DSM 43481, SN 253
M. sp. DSM 762, ATCC 8458, NCIB 8167, ...
M. sp. DSM 2966, NRRL B-3683
M. sp. DSM 6387, INA 1
M. sp. Phen, DSM 9673
M. sp. OP8E, DSM 11399
M. sp. DSM 43058, CCM 1693
M. sp. DSM 43074, IMRU 789A
M. sp. DSM 43270, ATCC 12297
M. sp. DSM 43272, ATCC 13936
M. sp. DSM 43228, IMET 10672, SN 1202
M. sp. DSM 43529, SN 1800
M. sp. 3347a, DSM 43530, SN 1801
M. sp. Borstel 5794/91, 37/91, DSM 44716
M. sp. MIP, Mw, DSM 45239
M. sp. JDM 601, DSM 45742
M. sp. Lausanne 2413, DSM 43487, ATCC ...
M. sp. ST026863(HKI),
M. sp. ST027532(HKI),
M. sp. ST027903(HKI),
M. sp. ST000554(HKI),
M. sp. DSM 45202, YIM 65220
M. sp. b1_2, DSM 31013
M. sp. Root135, DSM 102466
M. sp. Root165, DSM 102467
M. sp. Root265, DSM 102468
M. sp. DSM 102776, Soil 538
M. sp. CIP 107487
M. sp. CCUG 28399
M. sp. CCUG 29010, ATCC 23403
M. sp. CCUG 29022, ATCC 23415
M. sp. CCUG 29031, ATCC 23424
M. sp. CCUG 29039, ATCC 23432
M. sp. CCUG 29040, ATCC 23433
M. sp. CCUG 29054, ATCC 15975
M. sp. CCUG 29056, ATCC 15982
M. sp. CCUG 29057, ATCC 15983
M. sp. CCUG 29058, ATCC 19073
M. sp. CCUG 29134
M. sp. CCUG 32174
M. sp. CCUG 32243
M. sp. CCUG 37676, JCM 6395
M. sp. CCUG 37909
M. sp. CCUG 38327
M. sp. CCUG 38328
M. sp. CCUG 47945
M. sp. CCUG 47946
M. sp. CCUG 47947
M. sp. CCUG 47948
M. sp. CCUG 50678
M. sp. CCUG 52298
M. sp. CCUG 52357
M. sp. CCUG 52361
M. sp. CCUG 61043
M. sp. CCUG 61273
M. sp. JCM 30985
M. sp. AA-804, DSM 44417, IFAM AA-804
M. sp. DSM 105959, CFH 90765
M. sp. ITM-2016-00315, A6, DSM 107137
M. sp. GESEQ-9, DSM 107958

Section

Mycobacterium sp. JC1 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Full Scientific Name (LPSN)	Mycobacterium Lehmann and Neumann 1896 (Approved Lists 1980)

	Synonym	Mycolicibacter
	Synonym	Mycolicibacillus
	Synonym	Mycolicibacterium
	Synonym	Mycobacteroides

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.999

[Ref.: #69480]	Motility	no Confidence in %93.156

Multimedia content

[Ref.: #1472]

Caption:

Medium 65 28°C

[Ref.: #1472]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1472]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1472]

Culture medium growth

[Ref.: #1472]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1472]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1472]			growth	30 °C

[Ref.: #1472]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.762

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1472]	Sample type/isolated from	soil
[Ref.: #1472]	Country	Republic of Korea
[Ref.: #1472]	Country ISO 3 Code	KOR
[Ref.: #1472]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Mycobacterium sp. DSM 3803 16S ribosomal RNA gene, partial sequence	AY147261	1475	ENA	212194 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium sp. DSM 3803	GCA_016995035	scaffold	GenBank	212194 tax ID	*
[Ref.: #66792]	Mycobacterium sp. DSM 3803	212194.3	wgs	PATRIC	212194 tax ID	*

[Ref.: #1472]

GC-content

44.5 mol%

paper chromatography

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycobacterium sp. DSM 3803 DSM 3803 NCBI: GCA_016995035.1
[Ref.: #69481]	spore-forming	no	88	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium sp. DSM 3803 DSM 3803 NCBI: GCA_016995035.1
[Ref.: #69480]	flagellated	no	97.716	no
[Ref.: #69480]	gram-positive	yes	86.172	no
[Ref.: #69480]	anaerobic	no	98.959	no
[Ref.: #69480]	aerobic	yes	89.022	no
[Ref.: #69480]	halophile	no	93.64	no
[Ref.: #69480]	spore-forming	no	72.394	no
[Ref.: #69480]	thermophile	no	99.612	yes
[Ref.: #69480]	glucose-util	yes	89.667	no
[Ref.: #69480]	motile	no	92.167	no
[Ref.: #69480]	glucose-ferment	no	89.929	no

Availability in culture collections External links

[Ref.: #1472]

Culture collection no.

DSM 3803

[Ref.: #77732]

SI-ID 47761

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Mycobacterium sp. Strain JC1 DSM 3803.	Thompson MG, Eiben CB, Pearson AN, Shih PM	Microbiol Resour Announc	10.1128/MRA.00150-21	2021	*
Metabolism	Functional characterization of the cutI gene for the transcription of carbon monoxide dehydrogenase genes in Mycobacterium sp. strain JC1 DSM 3803.	Lee JH, Park SW, Kim YM, Oh JI	J Microbiol	10.1007/s12275-017-6572-7	2016	*
Enzymology	Molecular cloning, purification, and characterization of a superoxide dismutase from a fast-growing Mycobacterium sp. Strain JC1 DSM 3803.	Nam JS, Yoon JH, Lee HI, Kim SW, Ro YT	J Microbiol	10.1007/s12275-011-1046-9	2011	*
Enzymology	Identification of trans- and cis-control elements involved in regulation of the carbon monoxide dehydrogenase genes in Mycobacterium sp. strain JC1 DSM 3803.	Oh JI, Park SJ, Shin SJ, Ko IJ, Han SJ, Park SW, Song T, Kim YM	J Bacteriol	10.1128/JB.00286-10	2010	*
Enzymology	Cloning and expression analysis of the duplicated genes for carbon monoxide dehydrogenase of Mycobacterium sp. strain JC1 DSM 3803.	Song T, Park SW, Park SJ, Kim JH, Yu JY, Oh JI, Kim YM	Microbiology (Reading)	10.1099/mic.0.034769-0	2009	*
Enzymology	Cloning, expression and characterization of the catalase-peroxidase (KatG) gene from a fast-growing Mycobacterium sp. strain JC1 DSM 3803.	Lee HI, Yoon JH, Nam JS, Kim YM, Ro YT	J Biochem	10.1093/jb/mvp197	2009	*
Enzymology	Identification and functional characterization of a gene for the methanol : N,N'-dimethyl-4-nitrosoaniline oxidoreductase from Mycobacterium sp. strain JC1 (DSM 3803).	Park H, Lee H, Ro YT, Kim YM	Microbiology (Reading)	10.1099/mic.0.034124-0	2009	*
Metabolism	Expression and regulation of ribulose 1,5-bisphosphate carboxylase/oxygenase genes in Mycobacterium sp. strain JC1 DSM 3803.	Lee JH, Park DO, Park SW, Hwang EH, Oh JI, Kim YM	J Microbiol	10.1007/s12275-008-0210-3	2009	*
Phylogeny	Presence of duplicate genes encoding a phylogenetically new subgroup of form I ribulose 1,5-bisphosphate carboxylase/oxygenase in Mycobacterium sp. strain JC1 DSM 3803.	Park SW, Hwang EH, Jang HS, Lee JH, Kang BS, Oh JI, Kim YM	Res Microbiol	10.1016/j.resmic.2008.12.002	2008	*
Enzymology	Purification and characterization of a copper-containing amine oxidase from Mycobacterium sp. strain JC1 DSM 3803 grown on benzylamine.	Lee HI, Kim YM, Ro YT	J Biochem	10.1093/jb/mvn047	2008	*
Enzymology	Cloning, characterization and expression of a gene encoding dihydroxyacetone synthase in Mycobacterium sp. strain JC1 DSM 3803.	Seo JG, Park SW, Park H, Kim SY, Ro YT, Kim E, Cho JW, Kim YM	Microbiology (Reading)	10.1099/mic.0.2007/011965-0	2007	*
Metabolism	Presence of an inducible semicarbazide-sensitive amine oxidase in Mycobacterium sp. Strain JC1 DSM 3803 grown on benzylamine.	Ro YT, Lee HI, Kim YM	J Microbiol	2359	2006	*
Enzymology	Purification, characterization, and physiological response of a catalase-peroxidase in Mycobacterium sp. strain JC1 DSM 3803 grown on methanol.	Ro YT, Lee HI, Kim EJ, Koo JH, Kim E, Kim YM	FEMS Microbiol Lett	10.1016/S0378-1097(03)00644-X	2003	*

References

#1472

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3803

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77732

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47761.1 )

* These data were automatically processed and therefore are not curated

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Mycobacterium sp. DSM 3803 DSM 3803

Mycobacterium sp. DSM 3803 DSM 3803

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