Name: Mycobacterium sp. Lausanne 2413
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8566

Type strain:

Species: Mycobacterium sp.

Strain Designation: Lausanne 2413

Culture col. no.: DSM 43487, ATCC 19237, IMET 10656, SN 286

Strain history: <- I. Tarnok, SN 286 <- R. Bönicke (Smooth) (Mycobacterium borstelense subsp. niacinogenes), Lausanne 2413

NCBI tax ID(s): 1785 (species)

SI-ID 36913

ATCC 19237, DSM 43487, IMET 10656

Other strains from Mycobacterium sp.

M. sp. FI-09026, DSM 45395 (type strain)
M. sp. Gent 7, DSM 43481, SN 253
M. sp. DSM 762, ATCC 8458, NCIB 8167, ...
M. sp. DSM 2966, NRRL B-3683
M. sp. JC1, DSM 3803
M. sp. DSM 6387, INA 1
M. sp. Phen, DSM 9673
M. sp. OP8E, DSM 11399
M. sp. DSM 43058, CCM 1693
M. sp. DSM 43074, IMRU 789A
M. sp. DSM 43270, ATCC 12297
M. sp. DSM 43272, ATCC 13936
M. sp. DSM 43228, IMET 10672, SN 1202
M. sp. DSM 43529, SN 1800
M. sp. 3347a, DSM 43530, SN 1801
M. sp. Borstel 5794/91, 37/91, DSM 44716
M. sp. MIP, Mw, DSM 45239
M. sp. JDM 601, DSM 45742
M. sp. ST026863(HKI),
M. sp. ST027532(HKI),
M. sp. ST027903(HKI),
M. sp. ST000554(HKI),
M. sp. DSM 45202, YIM 65220
M. sp. b1_2, DSM 31013
M. sp. Root135, DSM 102466
M. sp. Root165, DSM 102467
M. sp. Root265, DSM 102468
M. sp. DSM 102776, Soil 538
M. sp. CIP 107487
M. sp. CCUG 28399
M. sp. CCUG 29010, ATCC 23403
M. sp. CCUG 29022, ATCC 23415
M. sp. CCUG 29031, ATCC 23424
M. sp. CCUG 29039, ATCC 23432
M. sp. CCUG 29040, ATCC 23433
M. sp. CCUG 29054, ATCC 15975
M. sp. CCUG 29056, ATCC 15982
M. sp. CCUG 29057, ATCC 15983
M. sp. CCUG 29058, ATCC 19073
M. sp. CCUG 29134
M. sp. CCUG 32174
M. sp. CCUG 32243
M. sp. CCUG 37676, JCM 6395
M. sp. CCUG 37909
M. sp. CCUG 38327
M. sp. CCUG 38328
M. sp. CCUG 47945
M. sp. CCUG 47946
M. sp. CCUG 47947
M. sp. CCUG 47948
M. sp. CCUG 50678
M. sp. CCUG 52298
M. sp. CCUG 52357
M. sp. CCUG 52361
M. sp. CCUG 61043
M. sp. CCUG 61273
M. sp. JCM 30985
M. sp. AA-804, DSM 44417, IFAM AA-804
M. sp. DSM 105959, CFH 90765
M. sp. ITM-2016-00315, A6, DSM 107137
M. sp. GESEQ-9, DSM 107958

Section

Mycobacterium sp. Lausanne 2413 is a mesophilic bacterium that was isolated from gastric lavage.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Full Scientific Name (LPSN)	Mycobacterium Lehmann and Neumann 1896 (Approved Lists 1980)

	Synonym	Mycolicibacter
	Synonym	Mycolicibacillus
	Synonym	Mycolicibacterium
	Synonym	Mycobacteroides

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.718

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11077]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #11077]

Culture medium growth

[Ref.: #11077]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11077]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11077]			growth	37 °C

[Ref.: #11077]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.237

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11077]	Sample type/isolated from	gastric lavage
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Gastrointestinal tract

#Stomach

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY457082 (>99% sequence identity) for Mycobacteroides from Microbeatlas

Aquatic Samples	6199
Soil Samples	7046
Animal Samples	7007
Plant Samples	1742
Total Samples	21994

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Mycobacterium chelonae strain ATCC 19237 16S ribosomal RNA gene, partial sequence	AY457082	1481	ENA	1774 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacteroides chelonae ATCC 19237	GCA_001942555	contig	GenBank	1774 tax ID	*
[Ref.: #66792]	Mycobacterium chelonae strain ATCC 19237	1774.67	wgs	PATRIC	1774 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycobacterium chelonae strain ATCC 19237 PATRIC: 1774.67
[Ref.: #69481]	spore-forming	no	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium chelonae strain ATCC 19237 PATRIC: 1774.67
[Ref.: #69480]	motile	no	95.955	no
[Ref.: #69480]	gram-positive	yes	90.822	no
[Ref.: #69480]	anaerobic	no	99.407	no
[Ref.: #69480]	aerobic	yes	89.832	no
[Ref.: #69480]	halophile	no	92.64	no
[Ref.: #69480]	spore-forming	no	85.464	no
[Ref.: #69480]	thermophile	no	99.554	yes
[Ref.: #69480]	glucose-util	yes	80.375	no
[Ref.: #69480]	flagellated	no	98.415	no
[Ref.: #69480]	glucose-ferment	no	93.798	no

Availability in culture collections External links

[Ref.: #11077]

Culture collection no.

DSM 43487, ATCC 19237, IMET 10656, SN 286

[Ref.: #77950]

SI-ID 36913

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Variation among human, veterinary and environmental Mycobacterium chelonae-abscessus complex isolates observed using core genome phylogenomic analysis, targeted gene comparison, and anti-microbial susceptibility patterns.	Fogelson SB, Camus AC, Lorenz WW, Vasireddy R, Vasireddy S, Smith T, Brown-Elliott BA, Wallace RJ Jr, Hasan NA, Reischl U, Sanchez S	PLoS One	10.1371/journal.pone.0214274	2019	*

References

#11077

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43487

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77950

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36913.1 )

* These data were automatically processed and therefore are not curated

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Mycobacterium chelonae strain ATCC 19237

Mycobacterium chelonae strain ATCC 19237

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