Name: Psychrobacter vallis DSM 15337
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8197

Type strain:

Species: Psychrobacter vallis

Culture col. no.: DSM 15337, MTCC 4208, CMS 39, CIP 110992, MTCC 420B

Strain history: CIP <- 2015, DSMZ <- S. Shivaji, Antartica: strain CMS 39

NCBI tax ID(s): 248451 (species)

SI-ID 138038

DSM 15337

Special Collections

Section

Psychrobacter vallis DSM 15337 is a Gram-negative, coccus-shaped bacterium that was isolated from cyanobacterial mat samples.

coccus-shaped
Gram-negative
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Psychrobacter*
	Species	**Psychrobacter vallis**
	Full Scientific Name (LPSN)	Psychrobacter vallis Shivaji et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #30176]	Gram stain	negative

[Ref.: #30176]	Cell shape	coccus-shaped

[Ref.: #30176]	Motility	no
[Ref.: #123789]	Motility	no

[Ref.: #30176]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5852]

Culture medium

OXOID NUTRIENT BROTH (DSMZ Medium 948)

[Ref.: #5852]

Culture medium growth

[Ref.: #5852]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5852]

Culture medium composition

expand / minimize

[Ref.: #5852]

Culture medium

NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605)

[Ref.: #5852]

Culture medium growth

[Ref.: #5852]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5852]

Culture medium composition

expand / minimize

[Ref.: #5852]

Culture medium

LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)

[Ref.: #5852]

Culture medium growth

[Ref.: #5852]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5852]

Culture medium composition

expand / minimize

[Ref.: #36200]

Culture medium

Marine agar (MA)

[Ref.: #36200]

Culture medium growth

[Ref.: #36200]

Culture medium composition

expand / minimize

[Ref.: #123789]

Culture medium

CIP Medium 13

[Ref.: #123789]

Culture medium growth

[Ref.: #123789]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #5852]	growth	22 °C
[Ref.: #30176]	growth	04-30 °C
[Ref.: #30176]	optimum	17 °C
[Ref.: #36200]	growth	20 °C

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30176]		NaCl		growth	<7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30176]	alanine ChEBI	+	carbon source
[Ref.: #30176]	arginine ChEBI	+	carbon source
[Ref.: #30176]	glucose ChEBI	+	carbon source
[Ref.: #30176]	glutamate ChEBI	+	carbon source
[Ref.: #30176]	glycerol ChEBI	+	carbon source
[Ref.: #30176]	nitrate ChEBI	+	reduction
[Ref.: #30176]	phenylalanine ChEBI	+	carbon source
[Ref.: #30176]	pyruvate ChEBI	+	carbon source
[Ref.: #30176]	ribose ChEBI	+	carbon source
[Ref.: #30176]	serine ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30176]		catalase	+	1.11.1.6
[Ref.: #30176]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5852]	Sample type/isolated from	cyanobacterial mat samples
[Ref.: #5852]	Geographic location (country and/or sea, region)	McMurdo
[Ref.: #5852]	Continent	Australia and Oceania

[Ref.: #123789]	Sample type/isolated from	Cyanobacterial materials samples from various bodies
[Ref.: #123789]	Country	Antarctica
[Ref.: #123789]	Country ISO 3 Code	ATA
[Ref.: #123789]	Continent	Antarctica
* marker position based on {}

Isolation sources categories

#Environmental	#Microbial community	#Microbial mat
#Host	#Microbial	#Bacteria

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ584832 (>99% sequence identity) for Psychrobacter from Microbeatlas

Aquatic Samples	834
Soil Samples	114
Animal Samples	378
Plant Samples	37
Total Samples	1363

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5852]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123789]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30176]	Psychrobacter vallis partial 16S rRNA gene, isolate CMS 39	AJ584832	1481	GenBank ENA	248451 tax ID

[Ref.: #5852]	GC-content	43 mol%
[Ref.: #30176]	GC-content	46 mol%

Availability in culture collections External links

[Ref.: #5852]

Culture collection no.

DSM 15337, MTCC 4208, CMS 39, CIP 110992, MTCC 420B

[Ref.: #77600]

SI-ID 138038

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrobacter vallis sp. nov. and Psychrobacter aquaticus sp. nov., from Antarctica.	Shivaji S, Reddy GSN, Suresh K, Gupta P, Chintalapati S, Schumann P, Stackebrandt E, Matsumoto GI	Int J Syst Evol Microbiol	10.1099/ijs.0.03030-0	2005	*

References

#5852

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15337

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30176

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26525 (see below)

#36200 ; Curators of the CIP;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#77600

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138038.1 )

#123789 Collection of Institut Pasteur ; Curators of the CIP; CIP 110992

#26525

IJSEM 757 2005 ( DOI 10.1099/ijs.0.03030-0 , PubMed 15774658 )

* These data were automatically processed and therefore are not curated

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