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Strain identifier

BacDive ID: 8197

Type strain: Yes

Species: Psychrobacter vallis

Strain history: <- S. Shivaji; CMS39

NCBI tax ID(s): 248451 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5852

BacDive-ID: 8197

DSM-Number: 15337

keywords: 16S sequence, Bacteria, psychrophilic, Gram-negative, coccus-shaped

description: Psychrobacter vallis DSM 15337 is a psychrophilic, Gram-negative, coccus-shaped bacterium that was isolated from cyanobacterial mat samples.

NCBI tax id

  • NCBI tax id: 248451
  • Matching level: species

strain history: <- S. Shivaji; CMS39

doi: 10.13145/bacdive8197.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter vallis
  • full scientific name: Psychrobacter vallis Shivaji et al. 2005

@ref: 5852

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter vallis

full scientific name: Psychrobacter vallis Shivaji et al. 2005

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
30176negativecoccus-shapedno
69480negative99.667

pigmentation

  • @ref: 30176
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5852OXOID NUTRIENT BROTH (DSMZ Medium 948)yeshttps://mediadive.dsmz.de/medium/948Name: OXOID NUTRIENT BROTH (DSMZ Medium 948) Composition: Nutrient broth 13.0 g/l Distilled water
5852NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605)yeshttps://mediadive.dsmz.de/medium/605Name: NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605) Composition: Agar 15.0 g/l NaCl 5.0 g/l Peptone 5.0 g/l Yeast extract 2.0 g/l Lab-Lemco beef extract 1.0 g/l Distilled water
5852LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
36200Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
5852positivegrowth22psychrophilic
30176positivegrowth04-30
30176positiveoptimum17psychrophilic
36200positivegrowth20psychrophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.787

halophily

@refsaltgrowthtested relationconcentrationhalophily levelconfidence
30176NaClpositivegrowth<7.5 %
69480non-halophilic91.378

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3017616449alanine+carbon source
3017629016arginine+carbon source
3017617234glucose+carbon source
3017629987glutamate+carbon source
3017617754glycerol+carbon source
3017628044phenylalanine+carbon source
3017615361pyruvate+carbon source
3017633942ribose+carbon source
3017617822serine+carbon source
3017617632nitrate+reduction

enzymes

@refvalueactivityec
30176catalase+1.11.1.6
30176cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 5852
  • sample type: cyanobacterial mat samples
  • geographic location: McMurdo
  • continent: Australia and Oceania

isolation source categories

Cat1Cat2Cat3
#Environmental#Microbial community#Microbial mat
#Host#Microbial#Bacteria

taxonmaps

  • @ref: 69479
  • File name: preview.99_4732.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_209;98_234;99_4732&stattab=map
  • Last taxonomy: Psychrobacter
  • 16S sequence: AJ584832
  • Sequence Identity:
  • Total samples: 1363
  • soil counts: 114
  • aquatic counts: 834
  • animal counts: 378
  • plant counts: 37

Safety information

risk assessment

  • @ref: 5852
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 30176
  • description: Psychrobacter vallis partial 16S rRNA gene, isolate CMS 39
  • accession: AJ584832
  • length: 1481
  • database: nuccore
  • NCBI tax ID: 248451

GC content

@refGC-content
585243
3017646

External links

@ref: 5852

culture collection no.: DSM 15337, MTCC 4208, CMS 39

straininfo link

@refpassport
20218http://www.straininfo.net/strains/386597
20218http://www.straininfo.net/strains/386598

literature

  • topic: Phylogeny
  • Pubmed-ID: 15774658
  • title: Psychrobacter vallis sp. nov. and Psychrobacter aquaticus sp. nov., from Antarctica.
  • authors: Shivaji S, Reddy GSN, Suresh K, Gupta P, Chintalapati S, Schumann P, Stackebrandt E, Matsumoto GI
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.03030-0
  • year: 2005
  • mesh: Antarctic Regions, Cyanobacteria/growth & development, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Geologic Sediments/*microbiology, Molecular Sequence Data, Phenotype, Phylogeny, Psychrobacter/chemistry/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
5852Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15337)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15337
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2652510.1099/ijs.0.03030-015774658
30176Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604126525
36200Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34599
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)