Psychrobacter faecalis (DSM 14664, CIP 107288, Iso-46)

Name: Psychrobacter faecalis (DSM 14664, CIP 107288, Iso-46)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8184

Type strain

Strain Designation Iso-46

Culture col. no. DSM 14664 CIP 107288 Iso-46 CCUG 48039

NCBI tax ID(s) 180588

Special Collections DSMZ CIP CCUG

History <- P. Kämpfer; Iso-46 CIP <- 2001, P. Kämpfer, Giessen Univ., Giessen, Germany: strain Iso-46

Links

Psychrobacter faecalis Iso-46 is an obligate aerobe, Gram-negative, oval-shaped bacterium that was isolated from bioaerosol.

Gram-negative oval-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 100896

CIP 107288,DSM 14664,CCUG 46825,CCUG 48039,CCM 7339

@ref 20215

Last LPSN update 2026-02-09 11:19:38

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Psychrobacter

Species Psychrobacter faecalis

Full scientific name Psychrobacter faecalis Kämpfer et al. 2002

BacDive ID	Other strains from **Psychrobacter faecalis** (6)	Type strain
153975	P. faecalis CCUG 51808
155475	P. faecalis CCUG 57827
155479	P. faecalis CCUG 57834
155504	P. faecalis CCUG 57906
155962	P. faecalis CCUG 59794
156323	P. faecalis CCUG 61164

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119219	negative	oval-shaped
125438	negative		98
125439	negative		98.3

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5471	TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)	Medium recipe at MediaDive	Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
5471	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
41676	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119219	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5471	positive	growth	37
5471	positive	growth	36
41676	positive	growth	37
119219	positive	growth	5-37
119219	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
119219	obligate aerobe
125439	obligate aerobe	99.5

Spore formation

@ref	Spore formation	Confidence
125438		93.6
125439		98

Halophily

@ref	Salt	Growth	Tested relation	Concentration
119219	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
119219	16947 ChEBI	citrate	-	carbon source
119219	4853 ChEBI	esculin	-	hydrolysis
119219	17234 ChEBI	glucose	-	fermentation
119219	17234 ChEBI	glucose	-	degradation
119219	17716 ChEBI	lactose	-	fermentation
119219	17632 ChEBI	nitrate	+	reduction
119219	17632 ChEBI	nitrate	-	respiration
119219	16301 ChEBI	nitrite	-	reduction
119219	132112 ChEBI	sodium thiosulfate	-	builds gas from

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119219	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119219	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
119219	15688 ChEBI	acetoin	-
119219	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
119219	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119219	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
119219	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119219	caseinase	-	3.4.21.50
119219	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
119219	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119219	gamma-glutamyltransferase	+	2.3.2.2
119219	gelatinase	-
119219	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119219	lipase	+
68382	lipase (C 14)	+		from API zym
119219	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
119219	ornithine decarboxylase	-	4.1.1.17
119219	oxidase	+
119219	phenylalanine ammonia-lyase	+	4.3.1.24
119219	protease	+
68382	trypsin	-	3.4.21.4	from API zym
119219	tryptophan deaminase	+
119219	tween esterase	-
119219	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119219	-	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Air

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Isolation date
5471	bioaerosol	Germany	DEU	Europe
119219	Bioaerosol	Germany	DEU	Europe	2001

Taxonmaps

69479

Global distribution of 16S sequence HQ698562 (>99% sequence identity) for Psychrobacter from Microbeatlas

Aquatic Samples	1079
Soil Samples	382
Animal Samples	1459
Plant Samples	79
Total Samples	2999

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5471	2	Risk group (German classification) According to TRBA 466
119219	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1610757v1 assembly for Psychrobacter faecalis DSM 14664	contig	GCA_016107575	180588.4	8068852558	180588	57.82

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Psychrobacter faecalis strain DSM 14664 16S ribosomal RNA gene, partial sequence	HQ698562	1466	180588
5471	Psychrobacter faecalis 16S rRNA gene, strain Iso-46	AJ421528	1496	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698563	1474	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698564	1054	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698565	1464	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698566	1472	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698567	1467	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698568	1467	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698569	1442	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698570	1467	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698571	1467	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698572	1470	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698573	1467	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698574	1466	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698575	1481	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698576	1465	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698577	1501	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698578	975	180588
124043	Psychrobacter pulmonis strain UCL-NF 1791 16S ribosomal RNA gene, partial sequence.	HQ698588	1472	180588

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Psychrobacter faecalis DSM 14664
NCBI: GCA_016107575

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.00	no
125439	motility	BacteriaNetⓘ	yes	61.10	no
125439	gram_stain	BacteriaNetⓘ	negative	98.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Psychrobacter faecalis strain DSM 14664
PATRIC: 180588.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	96.50	no
125438	spore-forming	spore-formingⓘ	no	93.60	no
125438	thermophilic	thermophileⓘ	no	97.44	no
125438	aerobic	aerobicⓘ	yes	84.14	no
125438	flagellated	motile2+ⓘ	no	66.63	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Isolation and characterization of bacteria resistant to metallic copper surfaces.	Santo CE, Morais PV, Grass G.	Appl Environ Microbiol	10.1128/aem.01952-09	2010
Phylogeny	Psychrobacter fulvigenes sp. nov., isolated from a marine crustacean from the Sea of Japan.	Romanenko LA, Tanaka N, Frolova GM, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.007195-0	2009
Phylogeny	Psychrobacter faecalis sp. nov., a new species from a bioaerosol originating from pigeon faeces.	Kampfer P, Albrecht A, Buczolits S, Busse HJ	Syst Appl Microbiol	10.1078/0723-2020-00099	2002

References

#5471	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14664
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41676	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119219	Collection of Institut Pasteur ; Curators of the CIP; CIP 107288
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Psychrobacter faecalis (DSM 14664, CIP 107288, Iso-46)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016107575

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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