Name: Psychrobacter faecalis Iso-46
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8184

Type strain:

Species: Psychrobacter faecalis

Strain Designation: Iso-46

Culture col. no.: DSM 14664, CIP 107288, CCUG 48039

Strain history: CIP <- 2001, P. Kämpfer, Giessen Univ., Giessen, Germany: strain Iso-46

NCBI tax ID(s): 180588 (species)

SI-ID 100896

CIP 107288, DSM 14664, CCUG 46825, CCUG 48039, CCM 7339

Other strains from Psychrobacter faecalis

P. faecalis CCUG 51808
P. faecalis CCUG 57827
P. faecalis CCUG 57834
P. faecalis CCUG 57906
P. faecalis CCUG 59794
P. faecalis CCUG 61164

Section

Psychrobacter faecalis Iso-46 is an obligate aerobe, mesophilic bacterium that was isolated from bioaerosol.

mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Psychrobacter*
	Species	**Psychrobacter faecalis**
	Full Scientific Name (LPSN)	Psychrobacter faecalis Kämpfer et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #119219]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #119219]	Cell shape	oval-shaped

[Ref.: #119219]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.132

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5471]

Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

[Ref.: #5471]

Culture medium growth

[Ref.: #5471]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5471]

Culture medium composition

expand / minimize

[Ref.: #5471]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #5471]

Culture medium growth

[Ref.: #5471]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5471]

Culture medium composition

expand / minimize

[Ref.: #41676]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41676]

Culture medium growth

[Ref.: #41676]

Culture medium composition

expand / minimize

[Ref.: #119219]

Culture medium

CIP Medium 72

[Ref.: #119219]

Culture medium growth

[Ref.: #119219]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5471]		growth	37 °C
[Ref.: #5471]		growth	36 °C
[Ref.: #41676]		growth	37 °C
[Ref.: #119219]		growth	5-37 °C
[Ref.: #119219]	no	growth	41 °C

[Ref.: #5471]	Temperature range	mesophilic
[Ref.: #41676]	Temperature range	mesophilic
[Ref.: #119219]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119219]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #119219]		NaCl		growth	0-10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119219]	citrate ChEBI	-	carbon source
[Ref.: #119219]	esculin ChEBI	-	hydrolysis
[Ref.: #119219]	glucose ChEBI	-	fermentation
[Ref.: #119219]	glucose ChEBI	-	degradation
[Ref.: #119219]	lactose ChEBI	-	fermentation
[Ref.: #119219]	nitrate ChEBI	+	reduction
[Ref.: #119219]	nitrate ChEBI	-	respiration
[Ref.: #119219]	nitrite ChEBI	-	reduction
[Ref.: #119219]	sodium thiosulfate ChEBI	-	builds gas from

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119219]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #119219]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #119219]		acetoin ChEBI	-
[Ref.: #119219]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #119219]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119219]	amylase	-
[Ref.: #119219]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119219]	caseinase	-	3.4.21.50
[Ref.: #119219]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #119219]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119219]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #119219]	gelatinase	-
[Ref.: #119219]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119219]	lipase	+
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #119219]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #119219]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119219]	oxidase	+
[Ref.: #119219]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #119219]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119219]	tryptophan deaminase	+
[Ref.: #119219]	tween esterase	-
[Ref.: #119219]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119219]	10233	-	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5471]	Sample type/isolated from	bioaerosol
[Ref.: #5471]	Country	Germany
[Ref.: #5471]	Country ISO 3 Code	DEU
[Ref.: #5471]	Continent	Europe

[Ref.: #119219]	Sample type/isolated from	Bioaerosol
[Ref.: #119219]	Country	Germany
[Ref.: #119219]	Country ISO 3 Code	DEU
[Ref.: #119219]	Continent	Europe
[Ref.: #119219]	Isolation date	2001
* marker position based on {}

Isolation sources categories

#Environmental

#Air

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ698562 (>99% sequence identity) for Psychrobacter from Microbeatlas

Aquatic Samples	1079
Soil Samples	382
Animal Samples	1459
Plant Samples	79
Total Samples	2999

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5471]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119219]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5471]	Psychrobacter faecalis 16S rRNA gene, strain Iso-46	AJ421528	1496	ENA	180588 tax ID
[Ref.: #20218]	Psychrobacter faecalis strain DSM 14664 16S ribosomal RNA gene, partial sequence	HQ698562	1466	ENA	180588 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Psychrobacter faecalis DSM 14664	GCA_016107575	contig	GenBank	180588 tax ID	*
[Ref.: #66792]	Psychrobacter faecalis strain DSM 14664	180588.4	wgs	PATRIC	180588 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Psychrobacter faecalis strain DSM 14664 PATRIC: 180588.6
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Psychrobacter faecalis strain DSM 14664 PATRIC: 180588.4
[Ref.: #69480]	motile	no	82.946	no
[Ref.: #69480]	gram-positive	no	97.959	no
[Ref.: #69480]	anaerobic	no	98.6	no
[Ref.: #69480]	aerobic	yes	88.559	no
[Ref.: #69480]	halophile	yes	72.53	no
[Ref.: #69480]	spore-forming	no	96.912	no
[Ref.: #69480]	glucose-util	no	64.579	no
[Ref.: #69480]	flagellated	no	91.192	no
[Ref.: #69480]	glucose-ferment	no	94.144	no
[Ref.: #69480]	thermophile	no	99.143	yes

Availability in culture collections External links

[Ref.: #5471]

Culture collection no.

DSM 14664, CIP 107288, CCUG 48039

[Ref.: #77587]

SI-ID 100896

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrobacter fulvigenes sp. nov., isolated from a marine crustacean from the Sea of Japan.	Romanenko LA, Tanaka N, Frolova GM, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.007195-0	2009	*
Phylogeny	Psychrobacter faecalis sp. nov., a new species from a bioaerosol originating from pigeon faeces.	Kampfer P, Albrecht A, Buczolits S, Busse HJ	Syst Appl Microbiol	10.1078/0723-2020-00099	2002	*

References

#5471

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14664

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41676 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77587

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100896.1 )

#119219 Collection of Institut Pasteur ; Curators of the CIP; CIP 107288
* These data were automatically processed and therefore are not curated

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Psychrobacter faecalis strain DSM 14664

Psychrobacter faecalis strain DSM 14664

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