Name: Psychrobacter marincola 238-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8185

Type strain:

Species: Psychrobacter marincola

Strain Designation: 238-6

Culture col. no.: DSM 14160, KMM 277, CIP 107640

Strain history: CIP <- 2002, DSMZ <- P. Schumann <- L.A. Romanenko, KMM

NCBI tax ID(s): 154109 (species)

SI-ID 88138

DSM 14160, CIP 107640

Section

Psychrobacter marincola 238-6 is a mesophilic, Gram-negative, oval-shaped bacterium that was isolated from internal tissues of the ascidian Polysyncraton sp..

Gram-negative
oval-shaped
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Psychrobacter*
	Species	**Psychrobacter marincola**
	Full Scientific Name (LPSN)	Psychrobacter marincola Romanenko et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #120803]	Gram stain	negative

[Ref.: #120803]	Cell shape	oval-shaped

[Ref.: #120803]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5236]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5236]

Culture medium growth

[Ref.: #5236]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5236]

Culture medium composition

expand / minimize

[Ref.: #33152]

Culture medium

Marine agar (MA)

[Ref.: #33152]

Culture medium growth

[Ref.: #33152]

Culture medium composition

expand / minimize

[Ref.: #120803]

Culture medium

CIP Medium 13

[Ref.: #120803]

Culture medium growth

[Ref.: #120803]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5236]		growth	25 °C
[Ref.: #33152]		growth	25 °C
[Ref.: #120803]		growth	15-30 °C
[Ref.: #120803]	no	growth	5 °C
[Ref.: #120803]	no	growth	37 °C
[Ref.: #120803]	no	growth	41 °C

[Ref.: #5236]	Temperature range	mesophilic
[Ref.: #33152]	Temperature range	mesophilic
[Ref.: #120803]	Temperature range	psychrophilic
[Ref.: #120803]	Temperature range	mesophilic
[Ref.: #120803]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

	Salt	Tested relation		Salt conc.
[Ref.: #120803]	NaCl		growth	4-6	%
[Ref.: #120803]	NaCl	no	growth	0	%
[Ref.: #120803]	NaCl	no	growth	2	%
[Ref.: #120803]	NaCl	no	growth	8	%
[Ref.: #120803]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120803]	citrate ChEBI	-	carbon source
[Ref.: #120803]	esculin ChEBI	-	hydrolysis
[Ref.: #120803]	nitrate ChEBI	-	reduction
[Ref.: #120803]	nitrate ChEBI	-	respiration
[Ref.: #120803]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #120803]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #120803]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120803]		acetoin ChEBI	-
[Ref.: #120803]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120803]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120803]	amylase	-
[Ref.: #120803]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120803]	caseinase	-	3.4.21.50
[Ref.: #120803]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120803]	gelatinase	-
[Ref.: #120803]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120803]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120803]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120803]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120803]	oxidase	+
[Ref.: #120803]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #120803]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120803]	tryptophan deaminase	+
[Ref.: #120803]	tween esterase	+
[Ref.: #120803]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120803]	10530	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5236]	Sample type/isolated from	internal tissues of the ascidian Polysyncraton sp.
[Ref.: #5236]	Host species	Polysyncraton
[Ref.: #5236]	Geographic location (country and/or sea, region)	Indian Ocean 33°41'S 134°28'E
[Ref.: #5236]	Continent	Asia
[Ref.: #5236]	Geographic location	-33.6833°/134.4670°

[Ref.: #120803]	Sample type/isolated from	Internal tissues of the ascidian Polysyncraton sp.
[Ref.: #120803]	Geographic location (country and/or sea, region)	Indian Ocean
[Ref.: #120803]	Country	India
[Ref.: #120803]	Country ISO 3 Code	IND
[Ref.: #120803]	Continent	Asia
[Ref.: #120803]	Isolation date	1988
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Tunicata
#Host Body-Site	-	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ309941 (>99% sequence identity) for Psychrobacter from Microbeatlas

Aquatic Samples	1139
Soil Samples	91
Animal Samples	350
Plant Samples	18
Total Samples	1598

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5236]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120803]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5236]	Psychrobacter marincola 16S rRNA gene, strain KMM 277	AJ309941	1428	ENA	154109 tax ID

[Ref.: #5236]

GC-content

50.7 mol%

Availability in culture collections External links

[Ref.: #5236]

Culture collection no.

DSM 14160, KMM 277, CIP 107640

[Ref.: #77588]

SI-ID 88138

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Structure and in vitro Bioactivity against Cancer Cells of the Capsular Polysaccharide from the Marine Bacterium Psychrobacter marincola.	Kokoulin MS, Kuzmich AS, Romanenko LA, Chikalovets IV, Chernikov OV	Mar Drugs	10.3390/md18050268	2020	*
Phylogeny	Psychrobacter submarinus sp. nov. and Psychrobacter marincola sp. nov., psychrophilic halophiles from marine environments.	Romanenko LA, Schumann P, Rohde M, Lysenko AM, Mikhailov VV, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/00207713-52-4-1291	2002	*

References

#5236

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14160

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33152 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#77588

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID88138.1 )

#120803 Collection of Institut Pasteur ; Curators of the CIP; CIP 107640
* These data were automatically processed and therefore are not curated

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