Strain identifier
BacDive ID: 8184
Type strain:
Species: Psychrobacter faecalis
Strain Designation: Iso-46
Strain history: CIP <- 2001, P. Kämpfer, Giessen Univ., Giessen, Germany: strain Iso-46
NCBI tax ID(s): 180588 (species)
General
@ref: 5471
BacDive-ID: 8184
DSM-Number: 14664
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic
description: Psychrobacter faecalis Iso-46 is an obligate aerobe, mesophilic bacterium that was isolated from bioaerosol.
NCBI tax id
- NCBI tax id: 180588
- Matching level: species
strain history
@ref | history |
---|---|
5471 | <- P. Kämpfer; Iso-46 |
119219 | CIP <- 2001, P. Kämpfer, Giessen Univ., Giessen, Germany: strain Iso-46 |
doi: 10.13145/bacdive8184.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Psychrobacter
- species: Psychrobacter faecalis
- full scientific name: Psychrobacter faecalis Kämpfer et al. 2002
@ref: 5471
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter faecalis
full scientific name: Psychrobacter faecalis Kämpfer et al. 2002 emend. Deschaght et al. 2012
strain designation: Iso-46
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 90.132 | ||
69480 | 99.999 | negative | ||
119219 | no | negative | oval-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5471 | TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) | yes | https://mediadive.dsmz.de/medium/545 | Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water |
5471 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
41676 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
119219 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5471 | positive | growth | 37 | mesophilic |
5471 | positive | growth | 36 | mesophilic |
41676 | positive | growth | 37 | mesophilic |
119219 | positive | growth | 5-37 | |
119219 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 119219
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.999 |
halophily
- @ref: 119219
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-10 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
119219 | 16947 | citrate | - | carbon source |
119219 | 4853 | esculin | - | hydrolysis |
119219 | 17234 | glucose | - | fermentation |
119219 | 17716 | lactose | - | fermentation |
119219 | 17632 | nitrate | + | reduction |
119219 | 16301 | nitrite | - | reduction |
119219 | 132112 | sodium thiosulfate | - | builds gas from |
119219 | 17234 | glucose | - | degradation |
119219 | 17632 | nitrate | - | respiration |
antibiotic resistance
- @ref: 119219
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 119219
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
119219 | 15688 | acetoin | - | |
119219 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
119219 | oxidase | + | |
119219 | beta-galactosidase | - | 3.2.1.23 |
119219 | alcohol dehydrogenase | - | 1.1.1.1 |
119219 | gelatinase | - | |
119219 | amylase | - | |
119219 | DNase | - | |
119219 | caseinase | - | 3.4.21.50 |
119219 | catalase | + | 1.11.1.6 |
119219 | tween esterase | - | |
119219 | gamma-glutamyltransferase | + | 2.3.2.2 |
119219 | lecithinase | - | |
119219 | lipase | + | |
119219 | lysine decarboxylase | - | 4.1.1.18 |
119219 | ornithine decarboxylase | - | 4.1.1.17 |
119219 | phenylalanine ammonia-lyase | + | 4.3.1.24 |
119219 | protease | + | |
119219 | tryptophan deaminase | + | |
119219 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119219 | - | + | + | + | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | isolation date |
---|---|---|---|---|---|
5471 | bioaerosol | Germany | DEU | Europe | |
119219 | Bioaerosol | Germany | DEU | Europe | 2001 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Air
taxonmaps
- @ref: 69479
- File name: preview.99_3096.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_209;98_234;99_3096&stattab=map
- Last taxonomy: Psychrobacter
- 16S sequence: HQ698562
- Sequence Identity:
- Total samples: 2999
- soil counts: 382
- aquatic counts: 1079
- animal counts: 1459
- plant counts: 79
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
5471 | 2 | Risk group (German classification) |
119219 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Psychrobacter faecalis strain DSM 14664 16S ribosomal RNA gene, partial sequence | HQ698562 | 1466 | ena | 180588 |
5471 | Psychrobacter faecalis 16S rRNA gene, strain Iso-46 | AJ421528 | 1496 | ena | 180588 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Psychrobacter faecalis DSM 14664 | GCA_016107575 | contig | ncbi | 180588 |
66792 | Psychrobacter faecalis strain DSM 14664 | 180588.4 | wgs | patric | 180588 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 82.946 | no |
gram-positive | no | 97.959 | no |
anaerobic | no | 98.6 | no |
aerobic | yes | 88.559 | no |
halophile | yes | 72.53 | no |
spore-forming | no | 96.912 | no |
glucose-util | no | 64.579 | no |
flagellated | no | 91.192 | no |
glucose-ferment | no | 94.144 | no |
thermophile | no | 99.143 | yes |
External links
@ref: 5471
culture collection no.: DSM 14664, CIP 107288, CCUG 48039
straininfo link
- @ref: 77587
- straininfo: 100896
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 12086186 | Psychrobacter faecalis sp. nov., a new species from a bioaerosol originating from pigeon faeces. | Kampfer P, Albrecht A, Buczolits S, Busse HJ | Syst Appl Microbiol | 10.1078/0723-2020-00099 | 2002 | Aerosols, *Air Microbiology, Air Pollution, Animals, Columbidae/*microbiology, Fatty Acids/analysis, Feces/*microbiology, Gammaproteobacteria/genetics/*isolation & purification, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/analysis/classification, Sequence Alignment | Genetics |
Phylogeny | 19502339 | Psychrobacter fulvigenes sp. nov., isolated from a marine crustacean from the Sea of Japan. | Romanenko LA, Tanaka N, Frolova GM, Mikhailov VV | Int J Syst Evol Microbiol | 10.1099/ijs.0.007195-0 | 2009 | Animals, Bacterial Typing Techniques, Base Composition, Crustacea/*microbiology, DNA Gyrase/genetics, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Oceans and Seas, Phenotype, Phylogeny, Polymerase Chain Reaction/methods, Psychrobacter/*classification/genetics/*isolation & purification/physiology, RNA, Ribosomal, 16S/genetics, Seawater, Sequence Analysis, DNA, Species Specificity | Genetics |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5471 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14664) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14664 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
41676 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/4707 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
77587 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100896.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119219 | Curators of the CIP | Collection of Institut Pasteur (CIP 107288) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107288 |