Name: Planosporangium flavigriseum DSM 44991
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8037

Type strain:

Species: Planosporangium flavigriseum

Culture col. no.: DSM 44991, BCC 51133, CCTCC AA 205013, JCM 16008, NBRC 105377, TBRC 198, YIM 46034

Strain history: DSM 44991 <-- J. Wiese <-- Y. Jiang YIM 46034.

NCBI tax ID(s): 373681 (species)

Section

Planosporangium flavigriseum DSM 44991 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil in evergreen broad leaved forest.

Gram-positive
motile
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Planosporangium*
	Species	**Planosporangium flavigriseum**
	Full Scientific Name (LPSN)	Planosporangium flavigriseum Wiese et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32258]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32258]	Motility	yes

[Ref.: #20152]	Colony color	Saffron yellow (1017)
[Ref.: #20152]	Incubation period	10-14 days
[Ref.: #20152]	Cultivation medium used	ISP 2

[Ref.: #20152]	Colony color	Saffron yellow (1017)
[Ref.: #20152]	Incubation period	10-14 days
[Ref.: #20152]	Cultivation medium used	ISP 3

[Ref.: #20152]	Colony color	Light ivory (1015)
[Ref.: #20152]	Incubation period	10-14 days
[Ref.: #20152]	Cultivation medium used	ISP 4

[Ref.: #20152]	Colony color	Light ivory (1015)
[Ref.: #20152]	Incubation period	10-14 days
[Ref.: #20152]	Cultivation medium used	ISP 5

[Ref.: #20152]	Colony color	Light ivory (1015)
[Ref.: #20152]	Incubation period	10-14 days
[Ref.: #20152]	Cultivation medium used	ISP 6

[Ref.: #20152]	Colony color	Light ivory (1015)
[Ref.: #20152]	Incubation period	10-14 days
[Ref.: #20152]	Cultivation medium used	ISP 7

[Ref.: #32258]

Pigment production

[Ref.: #20152]	Multicellular complex forming ability	no
[Ref.: #20152]	Medium Name (multicellularity)	ISP 2

[Ref.: #20152]	Multicellular complex forming ability	no
[Ref.: #20152]	Medium Name (multicellularity)	ISP 3

[Ref.: #20152]	Multicellular complex forming ability	no
[Ref.: #20152]	Medium Name (multicellularity)	ISP 4

[Ref.: #20152]	Multicellular complex forming ability	no
[Ref.: #20152]	Medium Name (multicellularity)	ISP 5

[Ref.: #20152]	Multicellular complex forming ability	no
[Ref.: #20152]	Medium Name (multicellularity)	ISP 6

[Ref.: #20152]	Multicellular complex forming ability	no
[Ref.: #20152]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20152]

Culture medium

ISP 2

[Ref.: #20152]

Culture medium growth

[Ref.: #20152]

Culture medium composition

expand / minimize

[Ref.: #20152]

Culture medium

ISP 3

[Ref.: #20152]

Culture medium growth

[Ref.: #20152]

Culture medium composition

expand / minimize

[Ref.: #20152]

Culture medium

ISP 4

[Ref.: #20152]

Culture medium growth

[Ref.: #20152]

Culture medium composition

expand / minimize

[Ref.: #20152]

Culture medium

ISP 5

[Ref.: #20152]

Culture medium growth

[Ref.: #20152]

Culture medium composition

expand / minimize

[Ref.: #20152]

Culture medium

ISP 6

[Ref.: #20152]

Culture medium growth

[Ref.: #20152]

Culture medium composition

expand / minimize

[Ref.: #20152]

Culture medium

ISP 7

[Ref.: #20152]

Culture medium growth

[Ref.: #20152]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20152]			optimum	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #20152]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32258]

Oxygen tolerance

aerobe

[Ref.: #32258]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-10(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32258]	arabinose ChEBI	+	carbon source
[Ref.: #32258]	cellobiose ChEBI	+	carbon source
[Ref.: #32258]	galactose ChEBI	+	carbon source
[Ref.: #32258]	glucose ChEBI	+	carbon source
[Ref.: #32258]	maltose ChEBI	+	carbon source
[Ref.: #32258]	mannitol ChEBI	+	carbon source
[Ref.: #32258]	mannose ChEBI	+	carbon source
[Ref.: #32258]	melibiose ChEBI	+	carbon source
[Ref.: #32258]	raffinose ChEBI	+	carbon source
[Ref.: #32258]	rhamnose ChEBI	+	carbon source
[Ref.: #32258]	ribose ChEBI	+	carbon source
[Ref.: #32258]	sorbitol ChEBI	+	carbon source
[Ref.: #32258]	sucrose ChEBI	+	carbon source
[Ref.: #32258]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20152]	933	not determinedn.d.	+	+	+	-	+	+	+	+	+	+	+	-	-	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12223]	Sample type/isolated from	soil in evergreen broad leaved forest
[Ref.: #12223]	Geographic location (country and/or sea, region)	Yunnan, Menghai
[Ref.: #12223]	Country	China
[Ref.: #12223]	Country ISO 3 Code	CHN
[Ref.: #12223]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Evergreen broadleaved forest soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Menghai, Yunnan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12223]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20152]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12223]	Planosporangium flavigriseum partial 16S rRNA gene, type strain YIM 46034 = CCTCC AA 205013	AM232832	1470	ENA	373681 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planosporangium flavigriseum TBRC 198	GCA_011947225	contig	GenBank	373681 tax ID	*
[Ref.: #66792]	Planosporangium flavigriseum NBRC 105377	GCA_016862875	contig	GenBank	373681 tax ID	*
[Ref.: #66792]	Planosporangium flavigriseum strain NBRC 105377	373681.5	wgs	PATRIC	373681 tax ID	*
[Ref.: #66792]	Planosporangium flavigriseum strain TBRC 198	373681.3	wgs	PATRIC	373681 tax ID	*

[Ref.: #12223]	GC-content	71.4 mol%
[Ref.: #67770]	GC-content	71.4 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Planosporangium flavigriseum strain TBRC 198 PATRIC: 373681.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Planosporangium flavigriseum strain NBRC 105377 PATRIC: 373681.5
[Ref.: #69480]	gram-positive	yes	89.13	no
[Ref.: #69480]	anaerobic	no	98.302	no
[Ref.: #69480]	halophile	no	97.198	no
[Ref.: #69480]	spore-forming	yes	85.195	no
[Ref.: #69480]	glucose-util	yes	85.975	yes
[Ref.: #69480]	aerobic	yes	90.666	no
[Ref.: #69480]	motile	yes	62.956	yes
[Ref.: #69480]	flagellated	no	91.777	no
[Ref.: #69480]	thermophile	no	92.979	yes
[Ref.: #69480]	glucose-ferment	no	90.821	no

Availability in culture collections External links

[Ref.: #12223]

Culture collection no.

DSM 44991, BCC 51133, CCTCC AA 205013, JCM 16008, NBRC 105377, TBRC 198, YIM 46034

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planosporangium thailandense sp. nov., isolated from soil from a Thai hot spring.	Thawai C, Thamsathit W, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.043539-0	2012	*
Phylogeny	Planosporangium mesophilum sp. nov., isolated from rhizosphere soil of Bletilla striata.	Cao YR, Wang Q, Jin RX, Jiang Y, Lai HX, He WX, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.026096-0	2010	*
Phylogeny	A new member of the family Micromonosporaceae, Planosporangium flavigriseum gen. nov., sp. nov.	Wiese J, Jiang Y, Tang SK, Thiel V, Schmaljohann R, Xu LH, Jiang CL, Imhoff JF	Int J Syst Evol Microbiol	10.1099/ijs.0.65211-0	2008	*

References

#12223

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44991

#20152

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32258

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28499 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#28499

IJSEM 1324 2008 ( DOI 10.1099/ijs.0.65211-0 , PubMed 18523173 )

* These data were automatically processed and therefore are not curated

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Planosporangium flavigriseum strain TBRC 198

Planosporangium flavigriseum strain NBRC 105377

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