Name: Longispora fulva KZ0017
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7882

Type strain:

Species: Longispora fulva

Strain Designation: KZ0017

Culture col. no.: DSM 45356, JCM 31208, NBRC 105670

Strain history: DSM 45356 <-- K. Ueda; Coll. of Bioresour. Sci., Nihon Univ., Japan; KZ0017.

NCBI tax ID(s): 619741 (species)

SI-ID 399525

DSM 45356

Section

Longispora fulva KZ0017 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Zelkova forest soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Longispora*
	Species	**Longispora fulva**
	Full Scientific Name (LPSN)	Longispora fulva Shiratori-Takano et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69387]	Colony color	Beige (1001), Olive grey (7002)
[Ref.: #69387]	Cultivation medium used	suter without tyrosine

[Ref.: #69387]	Colony color	Beige (1001), Curry (1027), Honey yellow (1005)
[Ref.: #69387]	Cultivation medium used	ISP 3

[Ref.: #69387]	Colony color	Beige (1001)
[Ref.: #69387]	Cultivation medium used	ISP 7

[Ref.: #69387]	Colony color	Beige (1001)
[Ref.: #69387]	Cultivation medium used	suter with tyrosine

[Ref.: #69387]	Colony color	Iron grey (7011), Olive grey (7002)
[Ref.: #69387]	Cultivation medium used	ISP 6

[Ref.: #69387]	Colony color	Mouse grey (7005), Olive yellow (1020), Sulfur yellow (1016)
[Ref.: #69387]	Cultivation medium used	ISP 4

[Ref.: #69387]	Colony color	Olive brown (8008), Sepia brown (8014)
[Ref.: #69387]	Cultivation medium used	ISP 2

[Ref.: #69387]	Colony color	Olive grey (7002), Light ivory (1015)
[Ref.: #69387]	Cultivation medium used	ISP 5

[Ref.: #69387]	Pigment production	no
[Ref.: #69387]	Pigment name	Melanin
[Ref.: #69387]	Pigment production	yes
[Ref.: #69387]	Pigmentation color	Ochre brown (8001), ochre yellow (1024)
[Ref.: #69387]	Pigment name	soluble pigment

[Ref.: #69387]	Multicellular complex forming ability	no
[Ref.: #69387]	Multicellular complex name	Aerial mycelium
[Ref.: #69387]	Medium Name (multicellularity)	ISP 2

[Ref.: #69387]	Multicellular complex forming ability	no
[Ref.: #69387]	Multicellular complex name	Aerial mycelium
[Ref.: #69387]	Medium Name (multicellularity)	ISP 3

[Ref.: #69387]	Multicellular complex forming ability	no
[Ref.: #69387]	Multicellular complex name	Aerial mycelium
[Ref.: #69387]	Medium Name (multicellularity)	ISP 4

[Ref.: #69387]	Multicellular complex forming ability	no
[Ref.: #69387]	Multicellular complex name	Aerial mycelium
[Ref.: #69387]	Medium Name (multicellularity)	ISP 5

[Ref.: #69387]	Multicellular complex forming ability	no
[Ref.: #69387]	Multicellular complex name	Aerial mycelium
[Ref.: #69387]	Medium Name (multicellularity)	ISP 6

[Ref.: #69387]	Multicellular complex forming ability	no
[Ref.: #69387]	Multicellular complex name	Aerial mycelium
[Ref.: #69387]	Medium Name (multicellularity)	ISP 7

[Ref.: #69387]	Multicellular complex forming ability	no
[Ref.: #69387]	Multicellular complex name	Aerial mycelium
[Ref.: #69387]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69387]	Multicellular complex forming ability	no
[Ref.: #69387]	Multicellular complex name	Aerial mycelium
[Ref.: #69387]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

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Caption:

Plates (553, ISP2, ISP3, ISP4, ISP5, ISP7)

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Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69387]

Caption:

Plates (553, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69387]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #16347]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #16347]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69387]		NaCl		growth	0-7.5	%

[Ref.: #67770]

Observation

quinones: MK-10(H₄), MK-10(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69387]	arabinose ChEBI	+/-	growth
[Ref.: #69387]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69387]	fructose ChEBI	-	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69387]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69387]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69387]	mannose ChEBI	+/-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69387]	raffinose ChEBI	+/-	growth
[Ref.: #69387]	rhamnose ChEBI	-	growth
[Ref.: #69387]	sucrose ChEBI	+/-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69387]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69387]	3880	-	+	-	-	-	+	-	+	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69387]	6064	not determinedn.d.	+/-	+/-	+	+/-	+	+/-	+/-	+	-	+	+/-	+/-	+	+/-	-	+/-	+	+	+/-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16347]	Sample type/isolated from	Zelkova forest soil
[Ref.: #16347]	Geographic location (country and/or sea, region)	Fukushima,Ohnuma
[Ref.: #16347]	Country	Japan
[Ref.: #16347]	Country ISO 3 Code	JPN
[Ref.: #16347]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil at a group of old zelkova trees
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ohnuma, Fukushima Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16347]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16347]	Longispora fulva gene for 16S rRNA, partial sequence	AB489859	1417	ENA	619741 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Longispora fulva DSM 45356	GCA_015751905	contig	GenBank	619741 tax ID	*
[Ref.: #66792]	Longispora fulva NBRC 105670	GCA_016862835	contig	GenBank	619741 tax ID	*
[Ref.: #66792]	Longispora fulva strain DSM 45356	619741.3	wgs	PATRIC	619741 tax ID	*
[Ref.: #66792]	Longispora fulva strain NBRC 105670	619741.4	wgs	PATRIC	619741 tax ID	*
[Ref.: #66792]	Longispora fulva DSM 45356	2880541820	draft	JGI IMG/M	619741 tax ID	*

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GC-content

70.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Longispora fulva strain NBRC 105670 PATRIC: 619741.4
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Longispora fulva strain DSM 45356 PATRIC: 619741.3
[Ref.: #69480]	gram-positive	yes	86.27	no
[Ref.: #69480]	anaerobic	no	99.15	no
[Ref.: #69480]	halophile	no	92.229	no
[Ref.: #69480]	spore-forming	yes	94.408	no
[Ref.: #69480]	glucose-util	yes	88.094	yes
[Ref.: #69480]	thermophile	no	98.621	yes
[Ref.: #69480]	flagellated	no	97.362	no
[Ref.: #69480]	aerobic	yes	91.512	no
[Ref.: #69480]	motile	no	93.967	no
[Ref.: #69480]	glucose-ferment	no	91.327	yes

Availability in culture collections External links

[Ref.: #16347]

Culture collection no.

DSM 45356, JCM 31208, NBRC 105670

[Ref.: #77318]

SI-ID 399525

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Longispora urticae sp. nov., isolated from rhizosphere soil of Urtica urens L., and emended descriptions of the species Longisporaalbida and Longisporafulva.	Piao C, Jin L, Zhao J, Liu C, Zhao Y, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.002288	2017	*
Phylogeny	Longispora fulva sp. nov., isolated from a forest soil, and emended description of the genus Longispora.	Shiratori-Takano H, Yamada K, Beppu T, Ueda K	Int J Syst Evol Microbiol	10.1099/ijs.0.023531-0	2010	*

References

#16347

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45356

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69387

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77318

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399525.1 )

* These data were automatically processed and therefore are not curated

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Longispora fulva strain NBRC 105670

Longispora fulva strain DSM 45356

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