Longispora albida (DSM 44784, JCM 11711, NRRL B-24201)

Name: Longispora albida (DSM 44784, JCM 11711, NRRL B-24201)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7881

Type strain

Strain Designation K97-0003

Culture col. no. DSM 44784 JCM 11711 NRRL B-24201 K97-0003 NBRC 100759 2 more

NCBI tax ID(s) 1122182 203523

Special Collections DSMZ JCM

History <- NRRL <- S. Omura; K97-0003 S. ?mura K97-0003.

Links

Longispora albida K97-0003 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 100323

NRRL B-24201,JCM 11711,DSM 44784,NBRC 100759,BCRC 16381,CCRC 16381

@ref 20215

Last LPSN update 2026-02-09 11:19:34

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Longispora

Species Longispora albida

Full scientific name Longispora albida Matsumoto et al. 2003

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	90.5
125439	99.9	positive
125439	91.8

Multimedia

@ref:	66793
multimedia content:	EM_DSM_44784_1.jpg
multimedia.multimedia content:	EM_DSM_44784_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_44784_2.jpg
multimedia.multimedia content:	EM_DSM_44784_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_44784_3.jpg
multimedia.multimedia content:	EM_DSM_44784_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_44784_4.jpg
multimedia.multimedia content:	EM_DSM_44784_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_44784_5.jpg
multimedia.multimedia content:	EM_DSM_44784_5.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12088	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
12088	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
12088	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.4

Spore formation

@ref	Spore formation	Confidence
125439		90.2

Observation

67770

Observationquinones: MK-10(H₄), MK-10(H₆)

Metabolite production

@ref	Metabolite	Production
67770	actinohivin

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12088	soil	Tokyo	Japan	JPN	Asia
67770	Soil	Suginami, Tokyo	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12088	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM37982v1 assembly for Longispora albida DSM 44784	scaffold	GCA_000379825	1122182.3	2515154011	1122182	67.83

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12088	Longispora albida gene for 16S rRNA, partial sequence	AB089241	1476		203523

GC content

@ref	GC-content (mol%)	Method
12088	70
67770	70	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Longispora albida DSM 44784
NCBI: GCA_000379825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	90.20	no
125439	motility	BacteriaNetⓘ	no	91.80	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Longispora albida DSM 44784
PATRIC: 1122182.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.34	no
125438	anaerobic	anaerobicⓘ	no	89.29	no
125438	spore-forming	spore-formingⓘ	yes	76.36	no
125438	aerobic	aerobicⓘ	yes	88.49	no
125438	thermophilic	thermophileⓘ	no	95.00	no
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Functions of enzyme domains in 2-methylisoborneol biosynthesis and enzymatic synthesis of non-natural analogs.	Gu B, Liang LF, Dickschat JS.	Beilstein J Org Chem	10.3762/bjoc.19.104	2023
Enzymology	Genome-based analysis of non-ribosomal peptide synthetase and type-I polyketide synthase gene clusters in all type strains of the genus Herbidospora.	Komaki H, Ichikawa N, Oguchi A, Hamada M, Tamura T, Fujita N.	BMC Res Notes	10.1186/s13104-015-1526-9	2015
Phylogeny	Longispora urticae sp. nov., isolated from rhizosphere soil of Urtica urens L., and emended descriptions of the species Longisporaalbida and Longisporafulva.	Piao C, Jin L, Zhao J, Liu C, Zhao Y, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.002288	2017
Phylogeny	Allocatelliglobosispora scoriae gen. nov., sp. nov., isolated from volcanic ash.	Lee DW, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.020313-0	2010
Phylogeny	Longispora albida gen. nov., sp. nov., a novel genus of the family Micromonosporaceae.	Matsumoto A, Takahashi Y, Shinose M, Seino A, Iwai Y, Omura S	Int J Syst Evol Microbiol	10.1099/ijs.0.02595-0	2003

References

#12088	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44784
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Longispora albida (DSM 44784, JCM 11711, NRRL B-24201)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000379825

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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