Name: Dactylosporangium roseum SF-2186
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7872

Type strain:

Species: Dactylosporangium roseum

Strain Designation: SF-2186

Culture col. no.: DSM 43916, IFO 14352, JCM 3364, NBRC 14352, BCRC 13414, IMSNU 20066, KCTC 9357, NRRL B-16295

Strain history: Meiji Seika Kaisha, Ltd.; SF-2186.

NCBI tax ID(s): 47989 (species)

SI-ID 40207

ATCC 31744, DSM 43916, IFO 14352, JCM 3364, CCRC 13414, NRRL B-16295, KCTC 9357, NBRC 14352, BCRC 13414

Section

Dactylosporangium roseum SF-2186 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Dactylosporangium*
	Species	**Dactylosporangium roseum**
	Full Scientific Name (LPSN)	Dactylosporangium roseum Shomura et al. 1985

Information on morphological and physiological properties Morphology

[Ref.: #19980]	Colony color	Bright red orange (2008)
[Ref.: #19980]	Incubation period	10-14 days
[Ref.: #19980]	Cultivation medium used	ISP 2

[Ref.: #19980]	Colony color	Pastel yellow (1034)
[Ref.: #19980]	Incubation period	10-14 days
[Ref.: #19980]	Cultivation medium used	ISP 3

[Ref.: #19980]	Colony color	Pastel yellow (1034)
[Ref.: #19980]	Incubation period	10-14 days
[Ref.: #19980]	Cultivation medium used	ISP 4

[Ref.: #19980]	Colony color	Pastel yellow (1034)
[Ref.: #19980]	Incubation period	10-14 days
[Ref.: #19980]	Cultivation medium used	ISP 5

[Ref.: #19980]	Colony color	Pastel yellow (1034)
[Ref.: #19980]	Incubation period	10-14 days
[Ref.: #19980]	Cultivation medium used	ISP 6

[Ref.: #19980]	Colony color	Pastel yellow (1034)
[Ref.: #19980]	Incubation period	10-14 days
[Ref.: #19980]	Cultivation medium used	ISP 7

[Ref.: #19980]	Multicellular complex forming ability	no
[Ref.: #19980]	Medium Name (multicellularity)	ISP 2

[Ref.: #19980]	Multicellular complex forming ability	no
[Ref.: #19980]	Medium Name (multicellularity)	ISP 3

[Ref.: #19980]	Multicellular complex forming ability	no
[Ref.: #19980]	Medium Name (multicellularity)	ISP 4

[Ref.: #19980]	Multicellular complex forming ability	no
[Ref.: #19980]	Medium Name (multicellularity)	ISP 5

[Ref.: #19980]	Multicellular complex forming ability	no
[Ref.: #19980]	Medium Name (multicellularity)	ISP 6

[Ref.: #19980]	Multicellular complex forming ability	no
[Ref.: #19980]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

[Ref.: #19980]

Culture medium composition

expand / minimize

[Ref.: #19980]

Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #11267]	growth	28 °C
[Ref.: #19980]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #11267]	Temperature range	mesophilic
[Ref.: #19980]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19980]	Spore description	Formation of sporangia, spore surface smooth
[Ref.: #19980]	Ability of spore formation	yes

[Ref.: #11267]	Name of produced compound	antibiotic complex SF-2107
[Ref.: #67770]	Name of produced compound	Antibiotic complex SF-2107

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19980]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19980]	arabinose ChEBI	+/-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19980]	cellulose ChEBI	+/-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19980]	fructose ChEBI	+/-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19980]	glucose ChEBI	+/-
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19980]	mannitol ChEBI	+/-
[Ref.: #19980]	myo-inositol ChEBI	+/-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19980]	raffinose ChEBI	+/-
[Ref.: #19980]	rhamnose ChEBI	+/-
[Ref.: #19980]	sucrose ChEBI	+/-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19980]	xylose ChEBI	+/-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19980]	578	+	+	-	-	+	-	-	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11267]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shizuoka Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11267]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19980]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	D.roseum 16S rRNA gene	X93194	1472	ENA	47989 tax ID	*
[Ref.: #20218]	Dactylosporangium roseum gene for 16S ribosomal RNA, partial sequence	D86941	1465	ENA	47989 tax ID	*
[Ref.: #20218]	Dactylosporangium roseum 16S ribosomal RNA gene sequence	U58529	1411	ENA	47989 tax ID	*

Availability in culture collections External links

[Ref.: #11267]

Culture collection no.

DSM 43916, IFO 14352, JCM 3364, NBRC 14352, BCRC 13414, IMSNU 20066, KCTC 9357, NRRL B-16295

[Ref.: #77308]

SI-ID 40207

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dactylosporangium solaniradicis sp. nov., a novel actinobacterium isolated from a root of tomato (Solanum lycopersicum L.).	Fan J, Liu C, Ma Z, Zhou S, Li W, Li J, Chu L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-016-0697-2	2016	*
Phylogeny	Dactylosporangium darangshiense sp. nov., isolated from rock soil.	Seo SH, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.012856-0	2009	*

References

#11267

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43916

#19980

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#77308

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40207.1 )

* These data were automatically processed and therefore are not curated

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