Name: Dactylosporangium fulvum SF-2113
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7873

Type strain:

Species: Dactylosporangium fulvum

Strain Designation: SF-2113

Culture col. no.: DSM 43917, ATCC 43301, IFO 14381, JCM 5631, NBRC 14381, BCRC 13411, CGMCC 4.5629, HUT 6561, IMSNU 22055, KCTC 9356, NRRL B-16292

Strain history: Meiji Seika Kaisha, Ltd.; SF-2113.

NCBI tax ID(s): 53359 (species)

SI-ID 46045

ATCC 43301, IFO 14381, DSM 43917, JCM 5631, CCRC 13411, HUT 6561, NRRL B-16292, KCTC 9356, NBRC 14381, BCRC 13411

Special Collections

Section

Dactylosporangium fulvum SF-2113 is a spore-forming bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Dactylosporangium*
	Species	**Dactylosporangium fulvum**
	Full Scientific Name (LPSN)	Dactylosporangium fulvum Shomura et al. 1986

Information on morphological and physiological properties Morphology

[Ref.: #19616]	Colony color	Ochre brown
[Ref.: #19616]	Incubation period	10-14 days
[Ref.: #19616]	Cultivation medium used	ISP 2

[Ref.: #19616]	Colony color	Red orange
[Ref.: #19616]	Incubation period	10-14 days
[Ref.: #19616]	Cultivation medium used	ISP 3

[Ref.: #19616]	Colony color	Red orange
[Ref.: #19616]	Incubation period	10-14 days
[Ref.: #19616]	Cultivation medium used	ISP 4

[Ref.: #19616]	Colony color	Salmon orange
[Ref.: #19616]	Incubation period	10-14 days
[Ref.: #19616]	Cultivation medium used	ISP 7

[Ref.: #19616]	Incubation period	10-14 days
[Ref.: #19616]	Cultivation medium used	ISP 5

[Ref.: #19616]	Multicellular complex forming ability	no
[Ref.: #19616]	Medium Name (multicellularity)	ISP 2

[Ref.: #19616]	Multicellular complex forming ability	no
[Ref.: #19616]	Medium Name (multicellularity)	ISP 3

[Ref.: #19616]	Multicellular complex forming ability	no
[Ref.: #19616]	Medium Name (multicellularity)	ISP 4

[Ref.: #19616]	Multicellular complex forming ability	no
[Ref.: #19616]	Medium Name (multicellularity)	ISP 5

[Ref.: #19616]	Multicellular complex forming ability	no
[Ref.: #19616]	Medium Name (multicellularity)	ISP 6

[Ref.: #19616]	Multicellular complex forming ability	no
[Ref.: #19616]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11268]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11268]

Culture medium growth

[Ref.: #11268]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11268]

Culture medium composition

expand / minimize

[Ref.: #19616]

Culture medium

ISP 2

[Ref.: #19616]

Culture medium growth

[Ref.: #19616]

Culture medium composition

expand / minimize

[Ref.: #19616]

Culture medium

ISP 3

[Ref.: #19616]

Culture medium growth

[Ref.: #19616]

Culture medium composition

expand / minimize

[Ref.: #19616]

Culture medium

ISP 4

[Ref.: #19616]

Culture medium growth

[Ref.: #19616]

Culture medium composition

expand / minimize

[Ref.: #19616]

Culture medium

ISP 5

[Ref.: #19616]

Culture medium growth

[Ref.: #19616]

Culture medium composition

expand / minimize

[Ref.: #19616]

Culture medium

ISP 7

[Ref.: #19616]

Culture medium growth

[Ref.: #19616]

Culture medium composition

expand / minimize

[Ref.: #11268]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #11268]

Culture medium growth

[Ref.: #11268]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #11268]	growth	28 °C
[Ref.: #19616]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19616]	Spore description	Formation of sporangia, spore surface smooth
[Ref.: #19616]	Type of spore	spore
[Ref.: #19616]	Ability of spore formation	yes

[Ref.: #11268]

Name of produced compound

pyridomycine

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19616]		NaCl		growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19616]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19616]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19616]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19616]	glucose ChEBI	-
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19616]	mannitol ChEBI	-
[Ref.: #19616]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19616]	raffinose ChEBI	-
[Ref.: #19616]	rhamnose ChEBI	-
[Ref.: #19616]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19616]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	pyridomycin	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19616]	459	-	-	-	-	-	-	-	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19616]	446	not determinedn.d.	+	+	+	-	+	-	-	+	-	+	-	+	+	+	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11268]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chiba Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11268]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19616]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	D.fulvum 16S rRNA gene	X93192	1475	GenBank ENA	53359 tax ID	*
[Ref.: #20218]	Dactylosporangium fulvum gene for 16S ribosomal RNA, partial sequence	D86942	1463	GenBank ENA	53359 tax ID	*

Availability in culture collections External links

[Ref.: #11268]

Culture collection no.

DSM 43917, ATCC 43301, IFO 14381, JCM 5631, NBRC 14381, BCRC 13411, CGMCC 4.5629, HUT 6561, IMSNU 22055, KCTC 9356, NRRL B-16292

[Ref.: #77309]

SI-ID 46045

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dactylosporangium solaniradicis sp. nov., a novel actinobacterium isolated from a root of tomato (Solanum lycopersicum L.).	Fan J, Liu C, Ma Z, Zhou S, Li W, Li J, Chu L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-016-0697-2	2016	*
Phylogeny	Dactylosporangium sucinum sp. nov., isolated from Thai peat swamp forest soil.	Phongsopitanun W, Kudo T, Ohkuma M, Suwanborirux K, Tanasupawat S	J Antibiot (Tokyo)	10.1038/ja.2014.170	2015	*
Phylogeny	Dactylosporangium darangshiense sp. nov., isolated from rock soil.	Seo SH, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.012856-0	2009	*

References

#11268

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43917

#19616

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#77309

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46045.1 )

* These data were automatically processed and therefore are not curated

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